Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12325

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsgA and asd are separated by 96 nucleotidesasd and mscM are separated by 21 nucleotides OKFHMN_12320: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 2,356,403 to 2,357,455 rsgA OKFHMN_12325: asd - archaetidylserine decarboxylase, at 2,357,552 to 2,358,520 asd OKFHMN_12330: mscM - miniconductance mechanosensitive channel MscM, at 2,358,542 to 2,361,865 mscM Position (kb) 2357 2358 2359Strain fitness (log2 ratio) -1 0 1 2at 2357.460 kb on + strandat 2357.460 kb on + strandat 2357.465 kb on + strandat 2357.465 kb on + strandat 2357.465 kb on + strandat 2358.405 kb on + strand, within asdat 2358.406 kb on - strand, within asdat 2358.519 kb on - strandat 2358.519 kb on - strandat 2358.519 kb on - strandat 2358.593 kb on + strandat 2358.678 kb on + strandat 2358.678 kb on + strandat 2358.678 kb on + strandat 2358.763 kb on + strandat 2358.801 kb on + strandat 2358.801 kb on + strandat 2358.898 kb on + strand, within mscMat 2358.997 kb on - strand, within mscMat 2359.028 kb on - strand, within mscMat 2359.037 kb on - strand, within mscMat 2359.202 kb on + strand, within mscMat 2359.203 kb on - strand, within mscMat 2359.203 kb on - strand, within mscMat 2359.203 kb on - strand, within mscMat 2359.281 kb on + strand, within mscMat 2359.313 kb on - strand, within mscM

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,357,460 + +0.0
2,357,460 + -0.7
2,357,465 + +0.4
2,357,465 + -0.1
2,357,465 + +0.1
2,358,405 + asd OKFHMN_12325 0.88 +0.7
2,358,406 - asd OKFHMN_12325 0.88 -0.2
2,358,519 - +0.4
2,358,519 - -1.0
2,358,519 - +0.1
2,358,593 + +0.2
2,358,678 + +0.9
2,358,678 + -0.6
2,358,678 + +0.9
2,358,763 + +2.1
2,358,801 + -0.2
2,358,801 + -0.3
2,358,898 + mscM OKFHMN_12330 0.11 -1.1
2,358,997 - mscM OKFHMN_12330 0.14 +0.0
2,359,028 - mscM OKFHMN_12330 0.15 +0.5
2,359,037 - mscM OKFHMN_12330 0.15 -0.0
2,359,202 + mscM OKFHMN_12330 0.20 +0.5
2,359,203 - mscM OKFHMN_12330 0.20 -0.7
2,359,203 - mscM OKFHMN_12330 0.20 -0.2
2,359,203 - mscM OKFHMN_12330 0.20 +0.1
2,359,281 + mscM OKFHMN_12330 0.22 -0.2
2,359,313 - mscM OKFHMN_12330 0.23 +0.3

Or see this region's nucleotide sequence