Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10890

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfixX and fixB are separated by 50 nucleotidesfixB and fixA are separated by 14 nucleotides OKFHMN_10885: fixX - ferredoxin-like protein FixX, at 2,053,297 to 2,054,583 fixX OKFHMN_10890: fixB - electron transfer flavoprotein subunit alpha/FixB family protein, at 2,054,634 to 2,055,575 fixB OKFHMN_10895: fixA - Protein FixA, at 2,055,590 to 2,056,360 fixA Position (kb) 2054 2055 2056Strain fitness (log2 ratio) -2 -1 0 1 2at 2053.636 kb on - strand, within fixXat 2053.663 kb on - strand, within fixXat 2053.663 kb on - strand, within fixXat 2053.745 kb on - strand, within fixXat 2053.903 kb on - strand, within fixXat 2053.952 kb on - strand, within fixXat 2053.972 kb on - strand, within fixXat 2054.276 kb on + strand, within fixXat 2054.276 kb on + strand, within fixXat 2054.277 kb on - strand, within fixXat 2054.315 kb on + strand, within fixXat 2054.316 kb on - strand, within fixXat 2054.346 kb on + strand, within fixXat 2054.489 kb on - strandat 2054.584 kb on - strandat 2054.584 kb on - strandat 2054.732 kb on + strand, within fixBat 2054.733 kb on - strand, within fixBat 2054.848 kb on + strand, within fixBat 2054.849 kb on - strand, within fixBat 2054.849 kb on - strand, within fixBat 2054.849 kb on - strand, within fixBat 2055.194 kb on - strand, within fixBat 2055.200 kb on + strand, within fixBat 2055.201 kb on - strand, within fixBat 2055.495 kb on + strandat 2055.495 kb on + strandat 2055.496 kb on - strandat 2055.591 kb on + strandat 2055.746 kb on + strand, within fixAat 2055.852 kb on - strand, within fixAat 2055.896 kb on - strand, within fixAat 2055.896 kb on - strand, within fixAat 2055.984 kb on + strand, within fixAat 2055.985 kb on - strand, within fixAat 2056.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,053,636 - fixX OKFHMN_10885 0.26 +0.7
2,053,663 - fixX OKFHMN_10885 0.28 +0.9
2,053,663 - fixX OKFHMN_10885 0.28 +2.0
2,053,745 - fixX OKFHMN_10885 0.35 +1.3
2,053,903 - fixX OKFHMN_10885 0.47 +0.2
2,053,952 - fixX OKFHMN_10885 0.51 +0.7
2,053,972 - fixX OKFHMN_10885 0.52 +0.2
2,054,276 + fixX OKFHMN_10885 0.76 -0.3
2,054,276 + fixX OKFHMN_10885 0.76 +0.6
2,054,277 - fixX OKFHMN_10885 0.76 +0.2
2,054,315 + fixX OKFHMN_10885 0.79 -2.7
2,054,316 - fixX OKFHMN_10885 0.79 +0.4
2,054,346 + fixX OKFHMN_10885 0.82 -0.1
2,054,489 - +0.6
2,054,584 - +1.3
2,054,584 - -0.1
2,054,732 + fixB OKFHMN_10890 0.10 +0.2
2,054,733 - fixB OKFHMN_10890 0.11 -0.8
2,054,848 + fixB OKFHMN_10890 0.23 -2.2
2,054,849 - fixB OKFHMN_10890 0.23 +0.5
2,054,849 - fixB OKFHMN_10890 0.23 +0.1
2,054,849 - fixB OKFHMN_10890 0.23 +0.0
2,055,194 - fixB OKFHMN_10890 0.59 +0.1
2,055,200 + fixB OKFHMN_10890 0.60 +0.2
2,055,201 - fixB OKFHMN_10890 0.60 -0.2
2,055,495 + -0.3
2,055,495 + -0.6
2,055,496 - +2.4
2,055,591 + +0.7
2,055,746 + fixA OKFHMN_10895 0.20 -0.4
2,055,852 - fixA OKFHMN_10895 0.34 +0.3
2,055,896 - fixA OKFHMN_10895 0.40 +0.3
2,055,896 - fixA OKFHMN_10895 0.40 -0.1
2,055,984 + fixA OKFHMN_10895 0.51 +1.0
2,055,985 - fixA OKFHMN_10895 0.51 -0.1
2,056,419 - +0.1

Or see this region's nucleotide sequence