Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09650

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfdR and yfdS overlap by 10 nucleotidesyfdS and yfdT overlap by 1 nucleotidesyfdT and xerD are separated by 226 nucleotides OKFHMN_09645: yfdR - 5'-deoxynucleotidase, at 1,797,980 to 1,798,516 yfdR OKFHMN_09650: yfdS - Uncharacterized protein YfdS, at 1,798,507 to 1,798,869 yfdS OKFHMN_09655: yfdT - Uncharacterized protein YfdT, at 1,798,869 to 1,799,174 yfdT OKFHMN_09660: xerD - integrase, at 1,799,401 to 1,800,564 xerD Position (kb) 1798 1799Strain fitness (log2 ratio) -2 -1 0 1 2at 1797.545 kb on + strandat 1797.545 kb on + strandat 1797.546 kb on - strandat 1797.713 kb on + strandat 1797.713 kb on + strandat 1797.736 kb on - strandat 1797.754 kb on + strandat 1797.966 kb on - strandat 1797.966 kb on - strandat 1798.033 kb on + strandat 1798.202 kb on + strand, within yfdRat 1798.250 kb on - strand, within yfdRat 1798.281 kb on + strand, within yfdRat 1798.282 kb on - strand, within yfdRat 1798.299 kb on + strand, within yfdRat 1798.300 kb on - strand, within yfdRat 1798.472 kb on - strandat 1798.867 kb on + strandat 1798.867 kb on + strandat 1798.868 kb on - strandat 1798.975 kb on + strand, within yfdTat 1798.976 kb on - strand, within yfdTat 1799.011 kb on - strand, within yfdTat 1799.018 kb on - strand, within yfdTat 1799.044 kb on + strand, within yfdTat 1799.045 kb on - strand, within yfdTat 1799.242 kb on + strandat 1799.290 kb on + strandat 1799.296 kb on + strandat 1799.297 kb on - strandat 1799.297 kb on - strandat 1799.356 kb on + strandat 1799.357 kb on - strandat 1799.357 kb on - strandat 1799.385 kb on + strandat 1799.569 kb on - strand, within xerDat 1799.571 kb on - strand, within xerDat 1799.617 kb on - strand, within xerDat 1799.684 kb on + strand, within xerDat 1799.684 kb on + strand, within xerDat 1799.684 kb on + strand, within xerDat 1799.685 kb on - strand, within xerDat 1799.694 kb on + strand, within xerDat 1799.856 kb on + strand, within xerDat 1799.856 kb on + strand, within xerD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,797,545 + +0.6
1,797,545 + +0.0
1,797,546 - +0.2
1,797,713 + -0.5
1,797,713 + -2.3
1,797,736 - +0.4
1,797,754 + -0.1
1,797,966 - +0.0
1,797,966 - -0.8
1,798,033 + -0.4
1,798,202 + yfdR OKFHMN_09645 0.41 -1.8
1,798,250 - yfdR OKFHMN_09645 0.50 +0.7
1,798,281 + yfdR OKFHMN_09645 0.56 +0.6
1,798,282 - yfdR OKFHMN_09645 0.56 -0.8
1,798,299 + yfdR OKFHMN_09645 0.59 +0.1
1,798,300 - yfdR OKFHMN_09645 0.60 +0.9
1,798,472 - -0.5
1,798,867 + +0.1
1,798,867 + +0.0
1,798,868 - +0.8
1,798,975 + yfdT OKFHMN_09655 0.35 -0.6
1,798,976 - yfdT OKFHMN_09655 0.35 +1.0
1,799,011 - yfdT OKFHMN_09655 0.46 +0.8
1,799,018 - yfdT OKFHMN_09655 0.49 +1.8
1,799,044 + yfdT OKFHMN_09655 0.57 -1.8
1,799,045 - yfdT OKFHMN_09655 0.58 -1.4
1,799,242 + +1.7
1,799,290 + -0.6
1,799,296 + -0.8
1,799,297 - +0.1
1,799,297 - +0.4
1,799,356 + -0.7
1,799,357 - -0.0
1,799,357 - -0.6
1,799,385 + -0.9
1,799,569 - xerD OKFHMN_09660 0.14 +0.2
1,799,571 - xerD OKFHMN_09660 0.15 -0.7
1,799,617 - xerD OKFHMN_09660 0.19 -0.3
1,799,684 + xerD OKFHMN_09660 0.24 +1.0
1,799,684 + xerD OKFHMN_09660 0.24 +0.7
1,799,684 + xerD OKFHMN_09660 0.24 +0.6
1,799,685 - xerD OKFHMN_09660 0.24 -0.0
1,799,694 + xerD OKFHMN_09660 0.25 +2.1
1,799,856 + xerD OKFHMN_09660 0.39 +0.0
1,799,856 + xerD OKFHMN_09660 0.39 -0.0

Or see this region's nucleotide sequence