Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08635

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoA and iraP are separated by 100 nucleotidesiraP and ddlA are separated by 462 nucleotidesddlA and yaiZ are separated by 23 nucleotidesyaiZ and yaiY are separated by 259 nucleotidesyaiY and yaiW are separated by 58 nucleotides OKFHMN_08625: phoA - alkaline phosphatase, at 1,610,063 to 1,611,478 phoA OKFHMN_08630: iraP - anti-adapter protein IraP, at 1,611,579 to 1,611,839 iraP OKFHMN_08635: ddlA - D-alanine--D-alanine ligase, at 1,612,302 to 1,613,396 ddlA OKFHMN_08640: yaiZ - Uncharacterized protein YaiZ, at 1,613,420 to 1,613,632 yaiZ OKFHMN_08645: yaiY - Inner membrane protein YaiY, at 1,613,892 to 1,614,200 yaiY OKFHMN_08650: yaiW - surface-exposed outer membrane lipoprotein YaiW, at 1,614,259 to 1,615,353 yaiW Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -2 -1 0 1at 1611.365 kb on - strandat 1611.500 kb on + strandat 1611.529 kb on + strandat 1611.530 kb on - strandat 1611.530 kb on - strandat 1611.601 kb on - strandat 1611.613 kb on + strand, within iraPat 1611.762 kb on + strand, within iraPat 1611.763 kb on - strand, within iraPat 1611.809 kb on + strand, within iraPat 1611.813 kb on + strand, within iraPat 1611.932 kb on + strandat 1611.946 kb on - strandat 1612.107 kb on + strandat 1612.262 kb on + strandat 1612.267 kb on + strandat 1612.268 kb on - strandat 1612.544 kb on + strand, within ddlAat 1612.625 kb on + strand, within ddlAat 1612.684 kb on + strand, within ddlAat 1612.684 kb on + strand, within ddlAat 1612.684 kb on + strand, within ddlAat 1612.685 kb on - strand, within ddlAat 1612.715 kb on + strand, within ddlAat 1612.775 kb on + strand, within ddlAat 1612.894 kb on + strand, within ddlAat 1612.911 kb on + strand, within ddlAat 1613.061 kb on + strand, within ddlAat 1613.062 kb on - strand, within ddlAat 1613.067 kb on + strand, within ddlAat 1613.079 kb on + strand, within ddlAat 1613.079 kb on + strand, within ddlAat 1613.080 kb on - strand, within ddlAat 1613.080 kb on - strand, within ddlAat 1613.108 kb on - strand, within ddlAat 1613.279 kb on + strand, within ddlAat 1613.280 kb on - strand, within ddlAat 1613.280 kb on - strand, within ddlAat 1613.280 kb on - strand, within ddlAat 1613.317 kb on - strandat 1613.394 kb on + strandat 1613.395 kb on - strandat 1613.415 kb on + strandat 1613.482 kb on + strand, within yaiZat 1613.561 kb on - strand, within yaiZat 1613.570 kb on + strand, within yaiZat 1613.571 kb on - strand, within yaiZat 1613.573 kb on - strand, within yaiZat 1613.573 kb on - strand, within yaiZat 1613.573 kb on - strand, within yaiZat 1613.593 kb on - strand, within yaiZat 1613.593 kb on - strand, within yaiZat 1613.593 kb on - strand, within yaiZat 1613.596 kb on - strand, within yaiZat 1613.596 kb on - strand, within yaiZat 1613.596 kb on - strand, within yaiZat 1613.596 kb on - strand, within yaiZat 1613.596 kb on - strand, within yaiZat 1613.792 kb on + strandat 1613.793 kb on - strandat 1613.841 kb on - strandat 1613.971 kb on - strand, within yaiYat 1614.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,611,365 - -0.1
1,611,500 + -0.7
1,611,529 + -0.2
1,611,530 - -0.9
1,611,530 - +0.2
1,611,601 - -1.2
1,611,613 + iraP OKFHMN_08630 0.13 -0.1
1,611,762 + iraP OKFHMN_08630 0.70 -0.5
1,611,763 - iraP OKFHMN_08630 0.70 -0.2
1,611,809 + iraP OKFHMN_08630 0.88 +0.8
1,611,813 + iraP OKFHMN_08630 0.90 +0.6
1,611,932 + -1.6
1,611,946 - -0.9
1,612,107 + -0.6
1,612,262 + -0.4
1,612,267 + -0.2
1,612,268 - -0.1
1,612,544 + ddlA OKFHMN_08635 0.22 -0.2
1,612,625 + ddlA OKFHMN_08635 0.29 -2.3
1,612,684 + ddlA OKFHMN_08635 0.35 -0.7
1,612,684 + ddlA OKFHMN_08635 0.35 +0.6
1,612,684 + ddlA OKFHMN_08635 0.35 -0.0
1,612,685 - ddlA OKFHMN_08635 0.35 -0.0
1,612,715 + ddlA OKFHMN_08635 0.38 -0.6
1,612,775 + ddlA OKFHMN_08635 0.43 -2.3
1,612,894 + ddlA OKFHMN_08635 0.54 -0.3
1,612,911 + ddlA OKFHMN_08635 0.56 +1.1
1,613,061 + ddlA OKFHMN_08635 0.69 -0.5
1,613,062 - ddlA OKFHMN_08635 0.69 +0.8
1,613,067 + ddlA OKFHMN_08635 0.70 +1.0
1,613,079 + ddlA OKFHMN_08635 0.71 -0.8
1,613,079 + ddlA OKFHMN_08635 0.71 -0.3
1,613,080 - ddlA OKFHMN_08635 0.71 +0.0
1,613,080 - ddlA OKFHMN_08635 0.71 +0.1
1,613,108 - ddlA OKFHMN_08635 0.74 -1.3
1,613,279 + ddlA OKFHMN_08635 0.89 -0.6
1,613,280 - ddlA OKFHMN_08635 0.89 +0.8
1,613,280 - ddlA OKFHMN_08635 0.89 -0.3
1,613,280 - ddlA OKFHMN_08635 0.89 +0.3
1,613,317 - +0.4
1,613,394 + -0.6
1,613,395 - -1.0
1,613,415 + -0.9
1,613,482 + yaiZ OKFHMN_08640 0.29 +0.5
1,613,561 - yaiZ OKFHMN_08640 0.66 -0.2
1,613,570 + yaiZ OKFHMN_08640 0.70 +0.6
1,613,571 - yaiZ OKFHMN_08640 0.71 +0.1
1,613,573 - yaiZ OKFHMN_08640 0.72 +0.4
1,613,573 - yaiZ OKFHMN_08640 0.72 +0.7
1,613,573 - yaiZ OKFHMN_08640 0.72 +0.1
1,613,593 - yaiZ OKFHMN_08640 0.81 +0.1
1,613,593 - yaiZ OKFHMN_08640 0.81 +0.1
1,613,593 - yaiZ OKFHMN_08640 0.81 -1.6
1,613,596 - yaiZ OKFHMN_08640 0.83 +0.6
1,613,596 - yaiZ OKFHMN_08640 0.83 +0.8
1,613,596 - yaiZ OKFHMN_08640 0.83 +1.2
1,613,596 - yaiZ OKFHMN_08640 0.83 -0.2
1,613,596 - yaiZ OKFHMN_08640 0.83 -1.4
1,613,792 + -0.4
1,613,793 - -0.2
1,613,841 - +0.4
1,613,971 - yaiY OKFHMN_08645 0.26 -0.4
1,614,206 - -0.2

Or see this region's nucleotide sequence