Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08335

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpX and clpP are separated by 125 nucleotidesclpP and tig are separated by 244 nucleotides OKFHMN_08330: clpX - ATP-dependent protease ATP-binding subunit ClpX, at 1,548,251 to 1,549,525 clpX OKFHMN_08335: clpP - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 1,549,651 to 1,550,274 clpP OKFHMN_08340: tig - trigger factor, at 1,550,519 to 1,551,817 tig Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -2 -1 0 1at 1549.621 kb on - strandat 1549.625 kb on - strandat 1549.625 kb on - strandat 1549.657 kb on - strandat 1550.326 kb on - strandat 1550.337 kb on - strandat 1550.344 kb on - strandat 1550.374 kb on + strandat 1550.375 kb on - strandat 1550.385 kb on + strandat 1550.666 kb on - strand, within tigat 1550.784 kb on - strand, within tigat 1550.784 kb on - strand, within tigat 1551.005 kb on - strand, within tigat 1551.157 kb on - strand, within tigat 1551.215 kb on - strand, within tig

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,549,621 - -2.4
1,549,625 - -0.3
1,549,625 - +0.0
1,549,657 - -0.0
1,550,326 - -0.3
1,550,337 - -0.7
1,550,344 - -0.2
1,550,374 + +1.5
1,550,375 - +0.2
1,550,385 + -0.6
1,550,666 - tig OKFHMN_08340 0.11 +0.7
1,550,784 - tig OKFHMN_08340 0.20 -0.4
1,550,784 - tig OKFHMN_08340 0.20 -0.2
1,551,005 - tig OKFHMN_08340 0.37 +0.3
1,551,157 - tig OKFHMN_08340 0.49 +0.9
1,551,215 - tig OKFHMN_08340 0.54 +0.2

Or see this region's nucleotide sequence