Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07770

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybcH and envY are separated by 182 nucleotidesenvY and Arg_trna are separated by 45 nucleotidesArg_trna and fimZ are separated by 242 nucleotidesfimZ and sfmF are separated by 2 nucleotides OKFHMN_07760: ybcH - DUF4434 domain-containing protein, at 1,414,164 to 1,415,054 ybcH OKFHMN_07765: envY - DNA-binding transcriptional regulator EnvY, at 1,415,237 to 1,415,998 envY OKFHMN_07770: Arg_trna - tRNA-Arg(tct), at 1,416,044 to 1,416,120 _trna OKFHMN_07775: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 1,416,363 to 1,416,995 fimZ OKFHMN_07780: sfmF - fimbria assembly protein, at 1,416,998 to 1,417,513 sfmF Position (kb) 1416 1417Strain fitness (log2 ratio) -1 0 1at 1415.053 kb on - strandat 1415.053 kb on - strandat 1415.088 kb on + strandat 1415.089 kb on - strandat 1415.124 kb on - strandat 1415.195 kb on + strandat 1415.196 kb on - strandat 1415.398 kb on - strand, within envYat 1415.432 kb on + strand, within envYat 1415.449 kb on + strand, within envYat 1415.450 kb on - strand, within envYat 1415.458 kb on - strand, within envYat 1415.458 kb on - strand, within envYat 1415.611 kb on - strand, within envYat 1415.650 kb on - strand, within envYat 1415.657 kb on + strand, within envYat 1415.658 kb on - strand, within envYat 1415.658 kb on - strand, within envYat 1415.658 kb on - strand, within envYat 1415.660 kb on - strand, within envYat 1415.804 kb on + strand, within envYat 1415.807 kb on - strand, within envYat 1415.921 kb on - strand, within envYat 1415.942 kb on + strandat 1416.030 kb on - strandat 1416.033 kb on + strandat 1416.034 kb on - strandat 1416.243 kb on - strandat 1416.312 kb on - strandat 1416.363 kb on - strandat 1416.393 kb on - strandat 1416.610 kb on + strand, within fimZat 1417.112 kb on + strand, within sfmF

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,415,053 - +0.3
1,415,053 - +0.3
1,415,088 + +0.5
1,415,089 - -1.5
1,415,124 - -0.8
1,415,195 + -0.4
1,415,196 - -0.6
1,415,398 - envY OKFHMN_07765 0.21 +0.9
1,415,432 + envY OKFHMN_07765 0.26 -0.1
1,415,449 + envY OKFHMN_07765 0.28 +0.5
1,415,450 - envY OKFHMN_07765 0.28 -0.3
1,415,458 - envY OKFHMN_07765 0.29 -0.6
1,415,458 - envY OKFHMN_07765 0.29 -0.8
1,415,611 - envY OKFHMN_07765 0.49 -0.3
1,415,650 - envY OKFHMN_07765 0.54 -0.6
1,415,657 + envY OKFHMN_07765 0.55 +1.1
1,415,658 - envY OKFHMN_07765 0.55 +0.6
1,415,658 - envY OKFHMN_07765 0.55 +0.0
1,415,658 - envY OKFHMN_07765 0.55 +0.6
1,415,660 - envY OKFHMN_07765 0.56 -0.1
1,415,804 + envY OKFHMN_07765 0.74 +0.6
1,415,807 - envY OKFHMN_07765 0.75 -0.8
1,415,921 - envY OKFHMN_07765 0.90 -0.2
1,415,942 + -1.2
1,416,030 - -0.1
1,416,033 + +0.8
1,416,034 - +0.4
1,416,243 - +0.5
1,416,312 - -0.6
1,416,363 - -0.1
1,416,393 - +0.2
1,416,610 + fimZ OKFHMN_07775 0.39 -0.2
1,417,112 + sfmF OKFHMN_07780 0.22 +0.1

Or see this region's nucleotide sequence