Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07285

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthscC and OKFHMN_07285 are separated by 59 nucleotidesOKFHMN_07285 and djlC are separated by 162 nucleotidesdjlC and ybeU overlap by 4 nucleotides OKFHMN_07280: hscC - molecular chaperone HscC, at 1,308,550 to 1,310,220 hscC OKFHMN_07285: OKFHMN_07285 - Hsc56 co-chaperone of HscC, at 1,310,280 to 1,311,116 _07285 OKFHMN_07290: djlC - Uncharacterized J domain-containing protein DjlC, at 1,311,279 to 1,311,731 djlC OKFHMN_07295: ybeU - Uncharacterized protein YbeU, at 1,311,728 to 1,312,435 ybeU Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -2 -1 0 1at 1309.292 kb on + strand, within hscCat 1309.292 kb on + strand, within hscCat 1309.293 kb on - strand, within hscCat 1309.587 kb on - strand, within hscCat 1309.623 kb on + strand, within hscCat 1309.653 kb on + strand, within hscCat 1309.762 kb on - strand, within hscCat 1309.878 kb on + strand, within hscCat 1310.034 kb on + strand, within hscCat 1310.198 kb on - strandat 1310.201 kb on + strandat 1310.201 kb on + strandat 1310.475 kb on - strand, within OKFHMN_07285at 1310.517 kb on - strand, within OKFHMN_07285at 1310.520 kb on - strand, within OKFHMN_07285at 1310.762 kb on - strand, within OKFHMN_07285at 1310.775 kb on - strand, within OKFHMN_07285at 1310.788 kb on - strand, within OKFHMN_07285at 1310.882 kb on + strand, within OKFHMN_07285at 1310.883 kb on - strand, within OKFHMN_07285at 1310.965 kb on + strand, within OKFHMN_07285at 1311.176 kb on - strandat 1311.213 kb on + strandat 1311.289 kb on - strandat 1311.513 kb on + strand, within djlCat 1311.595 kb on + strand, within djlCat 1311.596 kb on - strand, within djlCat 1311.646 kb on - strand, within djlCat 1311.646 kb on - strand, within djlCat 1311.862 kb on - strand, within ybeUat 1311.862 kb on - strand, within ybeUat 1311.973 kb on - strand, within ybeUat 1311.973 kb on - strand, within ybeUat 1311.975 kb on + strand, within ybeUat 1311.976 kb on - strand, within ybeUat 1311.994 kb on - strand, within ybeU

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,309,292 + hscC OKFHMN_07280 0.44 -1.0
1,309,292 + hscC OKFHMN_07280 0.44 +0.5
1,309,293 - hscC OKFHMN_07280 0.44 +0.5
1,309,587 - hscC OKFHMN_07280 0.62 +1.2
1,309,623 + hscC OKFHMN_07280 0.64 +0.1
1,309,653 + hscC OKFHMN_07280 0.66 +0.4
1,309,762 - hscC OKFHMN_07280 0.73 -0.5
1,309,878 + hscC OKFHMN_07280 0.79 +0.8
1,310,034 + hscC OKFHMN_07280 0.89 +0.0
1,310,198 - -0.0
1,310,201 + -0.1
1,310,201 + -1.2
1,310,475 - OKFHMN_07285 0.23 +0.4
1,310,517 - OKFHMN_07285 0.28 -1.0
1,310,520 - OKFHMN_07285 0.29 -0.3
1,310,762 - OKFHMN_07285 0.58 -0.4
1,310,775 - OKFHMN_07285 0.59 -1.0
1,310,788 - OKFHMN_07285 0.61 +0.5
1,310,882 + OKFHMN_07285 0.72 +1.0
1,310,883 - OKFHMN_07285 0.72 -0.3
1,310,965 + OKFHMN_07285 0.82 +0.3
1,311,176 - +0.1
1,311,213 + +1.0
1,311,289 - -0.8
1,311,513 + djlC OKFHMN_07290 0.52 +1.2
1,311,595 + djlC OKFHMN_07290 0.70 -1.4
1,311,596 - djlC OKFHMN_07290 0.70 +0.0
1,311,646 - djlC OKFHMN_07290 0.81 +1.0
1,311,646 - djlC OKFHMN_07290 0.81 +0.7
1,311,862 - ybeU OKFHMN_07295 0.19 -0.1
1,311,862 - ybeU OKFHMN_07295 0.19 -2.5
1,311,973 - ybeU OKFHMN_07295 0.35 +0.1
1,311,973 - ybeU OKFHMN_07295 0.35 +0.5
1,311,975 + ybeU OKFHMN_07295 0.35 +0.2
1,311,976 - ybeU OKFHMN_07295 0.35 -1.3
1,311,994 - ybeU OKFHMN_07295 0.38 -1.9

Or see this region's nucleotide sequence