Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07190

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnB and Met_trna are separated by 379 nucleotidesMet_trna and Leu_trna are separated by 10 nucleotidesLeu_trna and Gln_trna are separated by 23 nucleotidesGln_trna and Gln_trna are separated by 34 nucleotidesGln_trna and Met_trna are separated by 15 nucleotidesMet_trna and Gln_trna are separated by 48 nucleotidesGln_trna and Gln_trna are separated by 37 nucleotidesGln_trna and ubiF are separated by 153 nucleotides OKFHMN_07180: asnB - asparagine synthase B, at 1,293,963 to 1,295,627 asnB OKFHMN_07185: Met_trna - tRNA-Met(cat), at 1,296,007 to 1,296,083 _trna OKFHMN_07190: Leu_trna - tRNA-Leu(tag), at 1,296,094 to 1,296,178 _trna OKFHMN_07195: Gln_trna - tRNA-Gln(ttg), at 1,296,202 to 1,296,276 _trna OKFHMN_07200: Gln_trna - tRNA-Gln(ttg), at 1,296,311 to 1,296,385 _trna OKFHMN_07205: Met_trna - tRNA-Met(cat), at 1,296,401 to 1,296,477 _trna OKFHMN_07210: Gln_trna - tRNA-Gln(ctg), at 1,296,526 to 1,296,600 _trna OKFHMN_07215: Gln_trna - tRNA-Gln(ctg), at 1,296,638 to 1,296,712 _trna OKFHMN_07220: ubiF - 3-demethoxyubiquinol 3-hydroxylase, at 1,296,866 to 1,298,041 ubiF Position (kb) 1296 1297Strain fitness (log2 ratio) -1 0 1at 1295.108 kb on + strand, within asnBat 1295.109 kb on - strand, within asnBat 1295.109 kb on - strand, within asnBat 1295.109 kb on - strand, within asnBat 1295.112 kb on + strand, within asnBat 1295.113 kb on - strand, within asnBat 1295.113 kb on - strand, within asnBat 1295.113 kb on - strand, within asnBat 1295.113 kb on - strand, within asnBat 1295.280 kb on + strand, within asnBat 1295.280 kb on + strand, within asnBat 1295.448 kb on + strand, within asnBat 1295.449 kb on - strand, within asnBat 1295.449 kb on - strand, within asnBat 1295.621 kb on + strandat 1295.621 kb on + strandat 1295.622 kb on - strandat 1295.671 kb on - strandat 1295.694 kb on + strandat 1295.771 kb on + strandat 1295.785 kb on + strandat 1295.871 kb on + strandat 1295.896 kb on - strandat 1296.604 kb on + strandat 1296.624 kb on + strandat 1296.624 kb on + strandat 1296.716 kb on + strandat 1296.790 kb on - strandat 1296.862 kb on - strandat 1296.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,295,108 + asnB OKFHMN_07180 0.69 +0.7
1,295,109 - asnB OKFHMN_07180 0.69 -0.4
1,295,109 - asnB OKFHMN_07180 0.69 -0.3
1,295,109 - asnB OKFHMN_07180 0.69 +0.4
1,295,112 + asnB OKFHMN_07180 0.69 +0.3
1,295,113 - asnB OKFHMN_07180 0.69 +0.3
1,295,113 - asnB OKFHMN_07180 0.69 +0.1
1,295,113 - asnB OKFHMN_07180 0.69 +1.0
1,295,113 - asnB OKFHMN_07180 0.69 -1.0
1,295,280 + asnB OKFHMN_07180 0.79 -1.0
1,295,280 + asnB OKFHMN_07180 0.79 +0.3
1,295,448 + asnB OKFHMN_07180 0.89 -0.2
1,295,449 - asnB OKFHMN_07180 0.89 +0.3
1,295,449 - asnB OKFHMN_07180 0.89 -0.8
1,295,621 + +0.2
1,295,621 + -0.3
1,295,622 - +1.5
1,295,671 - +1.0
1,295,694 + +0.4
1,295,771 + +0.3
1,295,785 + +0.0
1,295,871 + -1.6
1,295,896 - -0.0
1,296,604 + +1.7
1,296,624 + -0.1
1,296,624 + +0.4
1,296,716 + +0.2
1,296,790 - -0.8
1,296,862 - +0.6
1,296,862 - -0.1

Or see this region's nucleotide sequence