Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06720

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalT and galT are separated by 9 nucleotidesgalT and galK are separated by 3 nucleotides OKFHMN_06715: galT - galactose-1-phosphate uridylyltransferase, at 1,197,347 to 1,198,363 galT OKFHMN_06720: galT - galactose-1-phosphate uridylyltransferase, at 1,198,373 to 1,199,419 galT OKFHMN_06725: galK - galactokinase, at 1,199,423 to 1,200,571 galK Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1197.946 kb on + strand, within galTat 1197.946 kb on + strand, within galTat 1197.947 kb on - strand, within galTat 1197.953 kb on + strand, within galTat 1197.954 kb on - strand, within galTat 1197.973 kb on - strand, within galTat 1198.035 kb on + strand, within galTat 1198.043 kb on + strand, within galTat 1198.043 kb on + strand, within galTat 1198.044 kb on - strand, within galTat 1198.053 kb on + strand, within galTat 1198.122 kb on - strand, within galTat 1198.203 kb on - strand, within galTat 1198.413 kb on - strandat 1198.506 kb on + strand, within galTat 1198.578 kb on - strand, within galTat 1198.590 kb on - strand, within galTat 1198.805 kb on + strand, within galTat 1198.855 kb on + strand, within galTat 1198.889 kb on - strand, within galTat 1198.974 kb on - strand, within galTat 1199.074 kb on - strand, within galTat 1199.168 kb on + strand, within galTat 1199.298 kb on + strand, within galTat 1199.299 kb on - strand, within galTat 1199.302 kb on + strand, within galTat 1199.303 kb on - strand, within galTat 1199.534 kb on + strandat 1199.705 kb on + strand, within galKat 1199.802 kb on + strand, within galKat 1199.927 kb on - strand, within galKat 1200.223 kb on + strand, within galKat 1200.289 kb on + strand, within galKat 1200.289 kb on + strand, within galKat 1200.290 kb on - strand, within galKat 1200.323 kb on - strand, within galK

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,197,946 + galT OKFHMN_06715 0.59 +1.2
1,197,946 + galT OKFHMN_06715 0.59 +0.5
1,197,947 - galT OKFHMN_06715 0.59 +1.0
1,197,953 + galT OKFHMN_06715 0.60 +2.1
1,197,954 - galT OKFHMN_06715 0.60 +0.4
1,197,973 - galT OKFHMN_06715 0.62 +1.3
1,198,035 + galT OKFHMN_06715 0.68 +1.3
1,198,043 + galT OKFHMN_06715 0.68 +1.1
1,198,043 + galT OKFHMN_06715 0.68 +1.6
1,198,044 - galT OKFHMN_06715 0.69 +0.9
1,198,053 + galT OKFHMN_06715 0.69 +0.6
1,198,122 - galT OKFHMN_06715 0.76 -0.3
1,198,203 - galT OKFHMN_06715 0.84 +0.7
1,198,413 - +1.2
1,198,506 + galT OKFHMN_06720 0.13 +0.4
1,198,578 - galT OKFHMN_06720 0.20 +0.6
1,198,590 - galT OKFHMN_06720 0.21 +0.9
1,198,805 + galT OKFHMN_06720 0.41 -0.0
1,198,855 + galT OKFHMN_06720 0.46 -3.3
1,198,889 - galT OKFHMN_06720 0.49 +0.7
1,198,974 - galT OKFHMN_06720 0.57 -1.8
1,199,074 - galT OKFHMN_06720 0.67 +0.6
1,199,168 + galT OKFHMN_06720 0.76 -0.6
1,199,298 + galT OKFHMN_06720 0.88 -0.9
1,199,299 - galT OKFHMN_06720 0.88 +1.8
1,199,302 + galT OKFHMN_06720 0.89 +0.4
1,199,303 - galT OKFHMN_06720 0.89 +0.7
1,199,534 + -1.2
1,199,705 + galK OKFHMN_06725 0.25 +0.4
1,199,802 + galK OKFHMN_06725 0.33 +0.3
1,199,927 - galK OKFHMN_06725 0.44 -1.6
1,200,223 + galK OKFHMN_06725 0.70 -0.3
1,200,289 + galK OKFHMN_06725 0.75 +0.6
1,200,289 + galK OKFHMN_06725 0.75 +0.4
1,200,290 - galK OKFHMN_06725 0.75 -0.3
1,200,323 - galK OKFHMN_06725 0.78 +0.5

Or see this region's nucleotide sequence