Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06650

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntint and ybhC are separated by 134 nucleotidesybhC and ybhJ are separated by 140 nucleotides OKFHMN_06645: int - Integrase, at 1,181,308 to 1,182,078 int OKFHMN_06650: ybhC - putative acyl-CoA thioester hydrolase, at 1,182,213 to 1,183,496 ybhC OKFHMN_06655: ybhJ - hydratase, at 1,183,637 to 1,185,898 ybhJ Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1181.229 kb on + strandat 1181.230 kb on - strandat 1181.320 kb on - strandat 1181.399 kb on - strand, within intat 1181.471 kb on + strand, within intat 1181.472 kb on - strand, within intat 1181.485 kb on - strand, within intat 1181.532 kb on - strand, within intat 1181.681 kb on + strand, within intat 1181.689 kb on + strand, within intat 1181.695 kb on + strand, within intat 1181.695 kb on + strand, within intat 1181.829 kb on + strand, within intat 1181.830 kb on - strand, within intat 1181.869 kb on + strand, within intat 1181.959 kb on + strand, within intat 1181.972 kb on + strand, within intat 1181.972 kb on + strand, within intat 1182.097 kb on + strandat 1182.154 kb on - strandat 1182.154 kb on - strandat 1182.278 kb on + strandat 1182.487 kb on + strand, within ybhCat 1182.528 kb on - strand, within ybhCat 1182.552 kb on + strand, within ybhCat 1182.591 kb on + strand, within ybhCat 1182.591 kb on + strand, within ybhCat 1182.727 kb on - strand, within ybhCat 1182.729 kb on - strand, within ybhCat 1182.737 kb on + strand, within ybhCat 1182.738 kb on - strand, within ybhCat 1182.750 kb on + strand, within ybhCat 1182.752 kb on + strand, within ybhCat 1182.752 kb on + strand, within ybhCat 1182.756 kb on + strand, within ybhCat 1182.756 kb on + strand, within ybhCat 1182.756 kb on + strand, within ybhCat 1182.875 kb on + strand, within ybhCat 1182.880 kb on + strand, within ybhCat 1182.880 kb on + strand, within ybhCat 1182.938 kb on + strand, within ybhCat 1183.147 kb on - strand, within ybhCat 1183.163 kb on + strand, within ybhCat 1183.179 kb on + strand, within ybhCat 1183.179 kb on + strand, within ybhCat 1183.424 kb on + strandat 1183.428 kb on + strandat 1183.428 kb on + strandat 1183.495 kb on - strandat 1183.501 kb on + strandat 1183.601 kb on - strandat 1183.601 kb on - strandat 1183.618 kb on + strandat 1183.619 kb on - strandat 1183.639 kb on - strandat 1183.726 kb on + strandat 1183.768 kb on + strandat 1183.822 kb on - strandat 1184.138 kb on - strand, within ybhJat 1184.291 kb on - strand, within ybhJat 1184.463 kb on - strand, within ybhJat 1184.466 kb on + strand, within ybhJ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
1,181,229 + +0.3
1,181,230 - +0.9
1,181,320 - +0.2
1,181,399 - int OKFHMN_06645 0.12 -1.5
1,181,471 + int OKFHMN_06645 0.21 +1.1
1,181,472 - int OKFHMN_06645 0.21 -0.1
1,181,485 - int OKFHMN_06645 0.23 -1.7
1,181,532 - int OKFHMN_06645 0.29 -0.4
1,181,681 + int OKFHMN_06645 0.48 +0.2
1,181,689 + int OKFHMN_06645 0.49 +0.1
1,181,695 + int OKFHMN_06645 0.50 +0.8
1,181,695 + int OKFHMN_06645 0.50 +0.4
1,181,829 + int OKFHMN_06645 0.68 +0.5
1,181,830 - int OKFHMN_06645 0.68 -2.8
1,181,869 + int OKFHMN_06645 0.73 +1.2
1,181,959 + int OKFHMN_06645 0.84 +0.0
1,181,972 + int OKFHMN_06645 0.86 -0.3
1,181,972 + int OKFHMN_06645 0.86 +1.4
1,182,097 + +1.1
1,182,154 - -0.4
1,182,154 - -0.2
1,182,278 + -1.1
1,182,487 + ybhC OKFHMN_06650 0.21 -0.6
1,182,528 - ybhC OKFHMN_06650 0.25 -0.3
1,182,552 + ybhC OKFHMN_06650 0.26 +0.2
1,182,591 + ybhC OKFHMN_06650 0.29 +0.1
1,182,591 + ybhC OKFHMN_06650 0.29 -0.5
1,182,727 - ybhC OKFHMN_06650 0.40 +0.5
1,182,729 - ybhC OKFHMN_06650 0.40 +1.2
1,182,737 + ybhC OKFHMN_06650 0.41 +1.0
1,182,738 - ybhC OKFHMN_06650 0.41 -0.2
1,182,750 + ybhC OKFHMN_06650 0.42 -0.2
1,182,752 + ybhC OKFHMN_06650 0.42 +0.9
1,182,752 + ybhC OKFHMN_06650 0.42 -0.7
1,182,756 + ybhC OKFHMN_06650 0.42 -0.1
1,182,756 + ybhC OKFHMN_06650 0.42 +0.9
1,182,756 + ybhC OKFHMN_06650 0.42 -1.4
1,182,875 + ybhC OKFHMN_06650 0.52 +0.0
1,182,880 + ybhC OKFHMN_06650 0.52 -1.4
1,182,880 + ybhC OKFHMN_06650 0.52 +1.1
1,182,938 + ybhC OKFHMN_06650 0.56 -0.9
1,183,147 - ybhC OKFHMN_06650 0.73 +0.8
1,183,163 + ybhC OKFHMN_06650 0.74 -0.4
1,183,179 + ybhC OKFHMN_06650 0.75 -0.1
1,183,179 + ybhC OKFHMN_06650 0.75 +0.4
1,183,424 + +0.4
1,183,428 + +0.0
1,183,428 + +1.3
1,183,495 - +1.8
1,183,501 + -0.1
1,183,601 - -0.3
1,183,601 - -0.3
1,183,618 + +0.6
1,183,619 - -0.1
1,183,639 - +0.3
1,183,726 + +0.1
1,183,768 + -0.1
1,183,822 - -1.4
1,184,138 - ybhJ OKFHMN_06655 0.22 +0.1
1,184,291 - ybhJ OKFHMN_06655 0.29 -0.5
1,184,463 - ybhJ OKFHMN_06655 0.37 -0.4
1,184,466 + ybhJ OKFHMN_06655 0.37 +0.1

Or see this region's nucleotide sequence