Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06535

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_06530 and OKFHMN_06535 overlap by 1 nucleotidesOKFHMN_06535 and gpA1 overlap by 4 nucleotides OKFHMN_06530: OKFHMN_06530 - phage portal protein, at 1,165,623 to 1,166,675 _06530 OKFHMN_06535: OKFHMN_06535 - hypothetical protein, at 1,166,675 to 1,166,887 _06535 OKFHMN_06540: gpA1 - DNA packaging protein, at 1,166,884 to 1,168,986 gpA1 Position (kb) 1166 1167Strain fitness (log2 ratio) -2 -1 0 1 2at 1165.691 kb on + strandat 1165.861 kb on + strand, within OKFHMN_06530at 1165.862 kb on - strand, within OKFHMN_06530at 1166.063 kb on + strand, within OKFHMN_06530at 1166.066 kb on - strand, within OKFHMN_06530at 1166.066 kb on - strand, within OKFHMN_06530at 1166.151 kb on - strand, within OKFHMN_06530at 1166.386 kb on - strand, within OKFHMN_06530at 1166.409 kb on - strand, within OKFHMN_06530at 1166.409 kb on - strand, within OKFHMN_06530at 1166.526 kb on + strand, within OKFHMN_06530at 1166.591 kb on - strandat 1166.720 kb on - strand, within OKFHMN_06535at 1166.848 kb on + strand, within OKFHMN_06535at 1166.848 kb on + strand, within OKFHMN_06535at 1166.849 kb on - strand, within OKFHMN_06535at 1167.162 kb on + strand, within gpA1at 1167.228 kb on - strand, within gpA1at 1167.420 kb on + strand, within gpA1at 1167.699 kb on - strand, within gpA1at 1167.861 kb on - strand, within gpA1at 1167.861 kb on - strand, within gpA1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,165,691 + -0.3
1,165,861 + OKFHMN_06530 0.23 +0.6
1,165,862 - OKFHMN_06530 0.23 -0.0
1,166,063 + OKFHMN_06530 0.42 -0.2
1,166,066 - OKFHMN_06530 0.42 +0.8
1,166,066 - OKFHMN_06530 0.42 +0.1
1,166,151 - OKFHMN_06530 0.50 +0.1
1,166,386 - OKFHMN_06530 0.72 +0.2
1,166,409 - OKFHMN_06530 0.75 +1.8
1,166,409 - OKFHMN_06530 0.75 +1.0
1,166,526 + OKFHMN_06530 0.86 +0.9
1,166,591 - +0.3
1,166,720 - OKFHMN_06535 0.21 -1.7
1,166,848 + OKFHMN_06535 0.81 +0.4
1,166,848 + OKFHMN_06535 0.81 -1.2
1,166,849 - OKFHMN_06535 0.82 -1.7
1,167,162 + gpA1 OKFHMN_06540 0.13 +0.6
1,167,228 - gpA1 OKFHMN_06540 0.16 +0.3
1,167,420 + gpA1 OKFHMN_06540 0.25 +0.2
1,167,699 - gpA1 OKFHMN_06540 0.39 -2.5
1,167,861 - gpA1 OKFHMN_06540 0.46 +0.4
1,167,861 - gpA1 OKFHMN_06540 0.46 -0.2

Or see this region's nucleotide sequence