Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05820

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjX and ybjD overlap by 4 nucleotidesybjD and aqpZ are separated by 425 nucleotides OKFHMN_05815: ybjX - Uncharacterized protein YbjX, at 1,023,086 to 1,024,078 ybjX OKFHMN_05820: ybjD - Uncharacterized protein YbjD, at 1,024,075 to 1,025,733 ybjD OKFHMN_05825: aqpZ - aquaporin Z, at 1,026,159 to 1,026,854 aqpZ Position (kb) 1024 1025 1026Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1023.107 kb on - strandat 1023.107 kb on - strandat 1023.154 kb on + strandat 1023.154 kb on + strandat 1023.155 kb on - strandat 1023.194 kb on - strand, within ybjXat 1023.426 kb on + strand, within ybjXat 1023.426 kb on + strand, within ybjXat 1023.437 kb on + strand, within ybjXat 1023.444 kb on + strand, within ybjXat 1023.457 kb on + strand, within ybjXat 1023.457 kb on + strand, within ybjXat 1023.480 kb on + strand, within ybjXat 1023.482 kb on + strand, within ybjXat 1023.616 kb on + strand, within ybjXat 1023.616 kb on + strand, within ybjXat 1023.616 kb on + strand, within ybjXat 1023.676 kb on + strand, within ybjXat 1023.966 kb on + strand, within ybjXat 1024.042 kb on + strandat 1024.076 kb on + strandat 1024.340 kb on - strand, within ybjDat 1024.429 kb on + strand, within ybjDat 1024.430 kb on - strand, within ybjDat 1024.430 kb on - strand, within ybjDat 1024.787 kb on - strand, within ybjDat 1024.827 kb on + strand, within ybjDat 1024.915 kb on + strand, within ybjDat 1024.920 kb on + strand, within ybjDat 1024.941 kb on + strand, within ybjDat 1025.078 kb on + strand, within ybjDat 1025.078 kb on + strand, within ybjDat 1025.079 kb on - strand, within ybjDat 1025.508 kb on + strand, within ybjDat 1025.536 kb on - strand, within ybjDat 1025.748 kb on + strandat 1025.776 kb on - strandat 1025.796 kb on - strandat 1025.876 kb on + strandat 1025.962 kb on + strandat 1025.986 kb on + strandat 1025.987 kb on - strandat 1026.079 kb on + strandat 1026.112 kb on + strandat 1026.412 kb on + strand, within aqpZat 1026.412 kb on + strand, within aqpZat 1026.412 kb on + strand, within aqpZat 1026.668 kb on - strand, within aqpZat 1026.683 kb on - strand, within aqpZat 1026.683 kb on - strand, within aqpZ

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,023,107 - +1.1
1,023,107 - +0.0
1,023,154 + +0.3
1,023,154 + -0.0
1,023,155 - +0.8
1,023,194 - ybjX OKFHMN_05815 0.11 -0.4
1,023,426 + ybjX OKFHMN_05815 0.34 +0.1
1,023,426 + ybjX OKFHMN_05815 0.34 +0.5
1,023,437 + ybjX OKFHMN_05815 0.35 +0.0
1,023,444 + ybjX OKFHMN_05815 0.36 +1.8
1,023,457 + ybjX OKFHMN_05815 0.37 -0.3
1,023,457 + ybjX OKFHMN_05815 0.37 -0.2
1,023,480 + ybjX OKFHMN_05815 0.40 -0.7
1,023,482 + ybjX OKFHMN_05815 0.40 +0.6
1,023,616 + ybjX OKFHMN_05815 0.53 -0.2
1,023,616 + ybjX OKFHMN_05815 0.53 -0.7
1,023,616 + ybjX OKFHMN_05815 0.53 -0.0
1,023,676 + ybjX OKFHMN_05815 0.59 -1.2
1,023,966 + ybjX OKFHMN_05815 0.89 -0.3
1,024,042 + -1.1
1,024,076 + -3.4
1,024,340 - ybjD OKFHMN_05820 0.16 +2.2
1,024,429 + ybjD OKFHMN_05820 0.21 -1.2
1,024,430 - ybjD OKFHMN_05820 0.21 -3.6
1,024,430 - ybjD OKFHMN_05820 0.21 -1.0
1,024,787 - ybjD OKFHMN_05820 0.43 -3.0
1,024,827 + ybjD OKFHMN_05820 0.45 +0.2
1,024,915 + ybjD OKFHMN_05820 0.51 -0.1
1,024,920 + ybjD OKFHMN_05820 0.51 +0.5
1,024,941 + ybjD OKFHMN_05820 0.52 +2.0
1,025,078 + ybjD OKFHMN_05820 0.60 -0.8
1,025,078 + ybjD OKFHMN_05820 0.60 +1.3
1,025,079 - ybjD OKFHMN_05820 0.61 +0.4
1,025,508 + ybjD OKFHMN_05820 0.86 -0.2
1,025,536 - ybjD OKFHMN_05820 0.88 -0.5
1,025,748 + -0.2
1,025,776 - +0.1
1,025,796 - -0.9
1,025,876 + +1.2
1,025,962 + -0.2
1,025,986 + +0.6
1,025,987 - +0.1
1,026,079 + -0.5
1,026,112 + +0.8
1,026,412 + aqpZ OKFHMN_05825 0.36 +0.2
1,026,412 + aqpZ OKFHMN_05825 0.36 -0.3
1,026,412 + aqpZ OKFHMN_05825 0.36 -0.4
1,026,668 - aqpZ OKFHMN_05825 0.73 +0.7
1,026,683 - aqpZ OKFHMN_05825 0.75 +0.2
1,026,683 - aqpZ OKFHMN_05825 0.75 -0.8

Or see this region's nucleotide sequence