Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05380

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnS and ompF are separated by 602 nucleotidesompF and aspC are separated by 184 nucleotides OKFHMN_05375: asnS - asparagine--tRNA ligase, at 897,712 to 899,112 asnS OKFHMN_05380: ompF - porin OmpF, at 899,715 to 900,803 ompF OKFHMN_05385: aspC - aspartate transaminase, at 900,988 to 902,178 aspC Position (kb) 899 900 901Strain fitness (log2 ratio) -3 -2 -1 0 1at 899.110 kb on + strandat 899.110 kb on + strandat 899.122 kb on + strandat 899.713 kb on + strandat 899.714 kb on - strandat 899.761 kb on + strandat 899.898 kb on + strand, within ompFat 899.969 kb on + strand, within ompFat 899.969 kb on + strand, within ompFat 900.085 kb on - strand, within ompFat 900.191 kb on + strand, within ompFat 900.200 kb on + strand, within ompFat 900.318 kb on + strand, within ompFat 900.324 kb on + strand, within ompFat 900.351 kb on + strand, within ompFat 900.438 kb on + strand, within ompFat 900.456 kb on + strand, within ompFat 900.708 kb on + strandat 900.708 kb on + strandat 900.708 kb on + strandat 900.708 kb on + strandat 900.801 kb on + strandat 900.973 kb on + strandat 901.387 kb on - strand, within aspCat 901.435 kb on + strand, within aspCat 901.761 kb on + strand, within aspC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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899,110 + +0.6
899,110 + -0.3
899,122 + +0.4
899,713 + -1.5
899,714 - +1.1
899,761 + +0.1
899,898 + ompF OKFHMN_05380 0.17 -3.7
899,969 + ompF OKFHMN_05380 0.23 +0.0
899,969 + ompF OKFHMN_05380 0.23 +0.4
900,085 - ompF OKFHMN_05380 0.34 -0.3
900,191 + ompF OKFHMN_05380 0.44 +0.3
900,200 + ompF OKFHMN_05380 0.45 +0.2
900,318 + ompF OKFHMN_05380 0.55 -0.1
900,324 + ompF OKFHMN_05380 0.56 -2.1
900,351 + ompF OKFHMN_05380 0.58 -1.1
900,438 + ompF OKFHMN_05380 0.66 -0.2
900,456 + ompF OKFHMN_05380 0.68 +0.2
900,708 + +0.1
900,708 + -0.1
900,708 + +0.5
900,708 + -0.1
900,801 + -0.1
900,973 + +0.3
901,387 - aspC OKFHMN_05385 0.34 -1.8
901,435 + aspC OKFHMN_05385 0.38 -2.9
901,761 + aspC OKFHMN_05385 0.65 -3.4

Or see this region's nucleotide sequence