Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccT and mgsA are separated by 95 nucleotides mgsA and helD are separated by 31 nucleotides helD and yccF are separated by 122 nucleotides yccF and yccS are separated by 9 nucleotides
OKFHMN_05200: yccT - DUF2057 domain-containing protein, at 858,924 to 859,586
yccT
OKFHMN_05205: mgsA - methylglyoxal synthase, at 859,682 to 860,140
mgsA
OKFHMN_05210: helD - DNA helicase IV, at 860,172 to 862,226
helD
OKFHMN_05215: yccF - YccF domain-containing protein, at 862,349 to 862,795
yccF
OKFHMN_05220: yccS - Inner membrane protein YccS, at 862,805 to 864,967
yccS
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 859.353 kb on + strand, within yccT at 859.354 kb on - strand, within yccT at 859.375 kb on - strand, within yccT at 859.548 kb on - strand at 859.635 kb on + strand at 859.644 kb on - strand at 859.648 kb on + strand at 859.649 kb on - strand at 859.656 kb on - strand at 859.676 kb on + strand at 859.721 kb on - strand at 859.788 kb on + strand, within mgsA at 859.803 kb on + strand, within mgsA at 859.833 kb on + strand, within mgsA at 859.959 kb on + strand, within mgsA at 860.288 kb on - strand at 860.714 kb on + strand, within helD at 860.715 kb on - strand, within helD at 861.306 kb on - strand, within helD at 861.384 kb on - strand, within helD at 861.429 kb on - strand, within helD at 861.698 kb on - strand, within helD at 862.178 kb on - strand at 862.448 kb on - strand, within yccF at 862.517 kb on - strand, within yccF at 862.517 kb on - strand, within yccF at 862.801 kb on + strand at 862.818 kb on + strand at 862.838 kb on + strand at 862.839 kb on - strand at 862.927 kb on - strand at 863.186 kb on + strand, within yccS at 863.186 kb on + strand, within yccS at 863.187 kb on - strand, within yccS at 863.211 kb on - strand, within yccS
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 859,353 + yccT OKFHMN_05200 0.65 -0.2 859,354 - yccT OKFHMN_05200 0.65 +0.5 859,375 - yccT OKFHMN_05200 0.68 -0.6 859,548 - -2.9 859,635 + -0.2 859,644 - +0.7 859,648 + -0.1 859,649 - +1.7 859,656 - -0.1 859,676 + -1.7 859,721 - -1.9 859,788 + mgsA OKFHMN_05205 0.23 -0.6 859,803 + mgsA OKFHMN_05205 0.26 +1.2 859,833 + mgsA OKFHMN_05205 0.33 -0.4 859,959 + mgsA OKFHMN_05205 0.60 +0.4 860,288 - -0.7 860,714 + helD OKFHMN_05210 0.26 +0.4 860,715 - helD OKFHMN_05210 0.26 +0.7 861,306 - helD OKFHMN_05210 0.55 -0.2 861,384 - helD OKFHMN_05210 0.59 +0.2 861,429 - helD OKFHMN_05210 0.61 +0.2 861,698 - helD OKFHMN_05210 0.74 +0.0 862,178 - -1.6 862,448 - yccF OKFHMN_05215 0.22 +0.2 862,517 - yccF OKFHMN_05215 0.38 +0.7 862,517 - yccF OKFHMN_05215 0.38 -1.9 862,801 + +1.1 862,818 + +0.8 862,838 + +0.1 862,839 - -0.8 862,927 - -4.7 863,186 + yccS OKFHMN_05220 0.18 +0.2 863,186 + yccS OKFHMN_05220 0.18 -1.0 863,187 - yccS OKFHMN_05220 0.18 +0.6 863,211 - yccS OKFHMN_05220 0.19 -0.3
Or see this region's nucleotide sequence