Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04815

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthyaA and Ser_trna are separated by 425 nucleotidesSer_trna and OKFHMN_04820 are separated by 104 nucleotidesOKFHMN_04820 and tccP are separated by 638 nucleotides OKFHMN_04810: hyaA - hydrogenase 1 small subunit, at 803,649 to 804,767 hyaA OKFHMN_04815: Ser_trna - tRNA-Ser(tga), at 805,193 to 805,280 _trna OKFHMN_04820: OKFHMN_04820 - hypothetical protein, at 805,385 to 805,567 _04820 OKFHMN_04825: tccP - Tir-cytoskeleton coupling protein TccP2, at 806,206 to 806,916 tccP Position (kb) 805 806Strain fitness (log2 ratio) -1 0 1at 804.420 kb on - strand, within hyaAat 804.433 kb on + strand, within hyaAat 804.434 kb on - strand, within hyaAat 804.434 kb on - strand, within hyaAat 804.698 kb on - strandat 805.001 kb on - strandat 805.334 kb on + strandat 805.357 kb on + strandat 805.493 kb on + strand, within OKFHMN_04820at 805.493 kb on + strand, within OKFHMN_04820at 805.689 kb on - strandat 805.834 kb on + strandat 805.928 kb on + strandat 805.940 kb on + strandat 806.098 kb on + strandat 806.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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804,420 - hyaA OKFHMN_04810 0.69 +0.6
804,433 + hyaA OKFHMN_04810 0.70 +0.4
804,434 - hyaA OKFHMN_04810 0.70 +0.2
804,434 - hyaA OKFHMN_04810 0.70 +1.4
804,698 - +0.6
805,001 - +0.5
805,334 + +1.4
805,357 + +1.0
805,493 + OKFHMN_04820 0.59 +1.6
805,493 + OKFHMN_04820 0.59 +0.3
805,689 - -1.0
805,834 + -0.9
805,928 + +0.1
805,940 + -0.3
806,098 + +0.0
806,099 - -1.1

Or see this region's nucleotide sequence