Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04755

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgfcD and gfcE are separated by 45 nucleotidesgfcE and etp overlap by 13 nucleotidesetp and etk are separated by 19 nucleotides OKFHMN_04750: gfcD - Uncharacterized lipoprotein GfcD, at 788,950 to 791,046 gfcD OKFHMN_04755: gfcE - Putative polysaccharide export protein GfcE, at 791,092 to 792,231 gfcE OKFHMN_04760: etp - protein-tyrosine-phosphatase Etp, at 792,219 to 792,665 etp OKFHMN_04765: etk - tyrosine-protein kinase, at 792,685 to 794,865 etk Position (kb) 791 792 793Strain fitness (log2 ratio) -2 -1 0 1 2at 790.097 kb on + strand, within gfcDat 790.502 kb on + strand, within gfcDat 790.624 kb on + strand, within gfcDat 790.753 kb on + strand, within gfcDat 790.753 kb on + strand, within gfcDat 790.839 kb on + strandat 790.844 kb on + strandat 790.844 kb on + strandat 790.844 kb on + strandat 790.844 kb on + strandat 791.083 kb on + strandat 791.154 kb on + strandat 791.155 kb on - strandat 791.221 kb on + strand, within gfcEat 791.245 kb on - strand, within gfcEat 791.399 kb on + strand, within gfcEat 791.419 kb on + strand, within gfcEat 791.480 kb on - strand, within gfcEat 791.514 kb on + strand, within gfcEat 791.952 kb on + strand, within gfcEat 792.033 kb on + strand, within gfcEat 792.319 kb on + strand, within etpat 792.319 kb on + strand, within etpat 792.319 kb on + strand, within etpat 792.428 kb on + strand, within etpat 792.681 kb on + strandat 792.784 kb on - strandat 792.836 kb on + strandat 792.861 kb on + strandat 792.861 kb on + strandat 793.110 kb on + strand, within etkat 793.173 kb on + strand, within etkat 793.207 kb on - strand, within etk

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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790,097 + gfcD OKFHMN_04750 0.55 +1.2
790,502 + gfcD OKFHMN_04750 0.74 +0.1
790,624 + gfcD OKFHMN_04750 0.80 -0.5
790,753 + gfcD OKFHMN_04750 0.86 +0.1
790,753 + gfcD OKFHMN_04750 0.86 +1.5
790,839 + -0.6
790,844 + -0.3
790,844 + +0.7
790,844 + +0.2
790,844 + +0.2
791,083 + -2.1
791,154 + +0.0
791,155 - +0.0
791,221 + gfcE OKFHMN_04755 0.11 +0.3
791,245 - gfcE OKFHMN_04755 0.13 -0.4
791,399 + gfcE OKFHMN_04755 0.27 +0.2
791,419 + gfcE OKFHMN_04755 0.29 +0.9
791,480 - gfcE OKFHMN_04755 0.34 -1.3
791,514 + gfcE OKFHMN_04755 0.37 +0.8
791,952 + gfcE OKFHMN_04755 0.75 +0.8
792,033 + gfcE OKFHMN_04755 0.83 +0.2
792,319 + etp OKFHMN_04760 0.22 +1.1
792,319 + etp OKFHMN_04760 0.22 +0.7
792,319 + etp OKFHMN_04760 0.22 +0.8
792,428 + etp OKFHMN_04760 0.47 +0.3
792,681 + +1.1
792,784 - +0.7
792,836 + +2.0
792,861 + +0.7
792,861 + +0.4
793,110 + etk OKFHMN_04765 0.19 +0.1
793,173 + etk OKFHMN_04765 0.22 -0.2
793,207 - etk OKFHMN_04765 0.24 -1.1

Or see this region's nucleotide sequence