Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04590 and putP are separated by 148 nucleotides putP and OKFHMN_04600 are separated by 158 nucleotides OKFHMN_04600 and putA are separated by 54 nucleotides
OKFHMN_04590: OKFHMN_04590 - hypothetical protein, at 755,609 to 756,952
_04590
OKFHMN_04595: putP - sodium/proline symporter PutP, at 757,101 to 758,609
putP
OKFHMN_04600: OKFHMN_04600 - hypothetical protein, at 758,768 to 758,977
_04600
OKFHMN_04605: putA - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 759,032 to 762,994
putA
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1 at 756.282 kb on + strand, within OKFHMN_04590 at 756.338 kb on + strand, within OKFHMN_04590 at 756.405 kb on + strand, within OKFHMN_04590 at 756.442 kb on + strand, within OKFHMN_04590 at 756.524 kb on + strand, within OKFHMN_04590 at 756.548 kb on - strand, within OKFHMN_04590 at 756.739 kb on - strand, within OKFHMN_04590 at 756.770 kb on - strand, within OKFHMN_04590 at 757.004 kb on + strand at 757.004 kb on + strand at 757.004 kb on + strand at 757.086 kb on + strand at 757.087 kb on - strand at 757.087 kb on - strand at 757.538 kb on - strand, within putP at 757.584 kb on + strand, within putP at 757.788 kb on - strand, within putP at 757.926 kb on - strand, within putP at 758.090 kb on - strand, within putP at 758.148 kb on - strand, within putP at 758.273 kb on - strand, within putP at 758.294 kb on + strand, within putP at 758.505 kb on - strand at 758.505 kb on - strand at 758.507 kb on - strand at 758.611 kb on + strand at 758.689 kb on - strand at 758.695 kb on + strand at 758.904 kb on - strand, within OKFHMN_04600 at 758.981 kb on + strand at 759.083 kb on - strand at 759.085 kb on + strand at 759.126 kb on + strand at 759.355 kb on + strand at 759.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 756,282 + OKFHMN_04590 0.50 +0.6 756,338 + OKFHMN_04590 0.54 +0.1 756,405 + OKFHMN_04590 0.59 +0.0 756,442 + OKFHMN_04590 0.62 +0.2 756,524 + OKFHMN_04590 0.68 +0.1 756,548 - OKFHMN_04590 0.70 +0.6 756,739 - OKFHMN_04590 0.84 +0.6 756,770 - OKFHMN_04590 0.86 -2.5 757,004 + -0.2 757,004 + -0.2 757,004 + -1.6 757,086 + +0.2 757,087 - -0.4 757,087 - -0.2 757,538 - putP OKFHMN_04595 0.29 -1.9 757,584 + putP OKFHMN_04595 0.32 +0.0 757,788 - putP OKFHMN_04595 0.46 +0.3 757,926 - putP OKFHMN_04595 0.55 +0.1 758,090 - putP OKFHMN_04595 0.66 +0.9 758,148 - putP OKFHMN_04595 0.69 +0.0 758,273 - putP OKFHMN_04595 0.78 -0.6 758,294 + putP OKFHMN_04595 0.79 +0.0 758,505 - +0.1 758,505 - -0.4 758,507 - +0.2 758,611 + +1.0 758,689 - +0.4 758,695 + +0.4 758,904 - OKFHMN_04600 0.65 +0.1 758,981 + +0.8 759,083 - +0.8 759,085 + -0.7 759,126 + -0.2 759,355 + +1.0 759,356 - -1.1
Or see this region's nucleotide sequence