Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03895

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03890 and OKFHMN_03895 are separated by 293 nucleotidesOKFHMN_03895 and OKFHMN_03900 overlap by 4 nucleotidesOKFHMN_03900 and OKFHMN_03905 are separated by 46 nucleotidesOKFHMN_03905 and OKFHMN_03910 are separated by 49 nucleotidesOKFHMN_03910 and OKFHMN_03915 overlap by 1 nucleotides OKFHMN_03890: OKFHMN_03890 - restriction endonuclease subunit M, at 619,552 to 620,394 _03890 OKFHMN_03895: OKFHMN_03895 - DUF5983 domain-containing protein, at 620,688 to 621,179 _03895 OKFHMN_03900: OKFHMN_03900 - toxin, at 621,176 to 621,550 _03900 OKFHMN_03905: OKFHMN_03905 - antitoxin, at 621,597 to 621,971 _03905 OKFHMN_03910: OKFHMN_03910 - Phage-related protein, at 622,021 to 622,134 _03910 OKFHMN_03915: OKFHMN_03915 - DUF987 domain-containing protein, at 622,134 to 622,355 _03915 Position (kb) 620 621 622Strain fitness (log2 ratio) -1 0 1 2at 619.825 kb on - strand, within OKFHMN_03890at 620.052 kb on + strand, within OKFHMN_03890at 621.844 kb on + strand, within OKFHMN_03905at 622.166 kb on - strand, within OKFHMN_03915

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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619,825 - OKFHMN_03890 0.32 +1.9
620,052 + OKFHMN_03890 0.59 -0.2
621,844 + OKFHMN_03905 0.66 +1.5
622,166 - OKFHMN_03915 0.14 -0.6

Or see this region's nucleotide sequence