Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03770

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrhO and lpxL are separated by 224 nucleotideslpxL and mdtG are separated by 426 nucleotides OKFHMN_03765: trhO - rhodanese-related sulfurtransferase, at 599,107 to 600,159 trhO OKFHMN_03770: lpxL - kdo(2)-lipid IV(A) lauroyltransferase, at 600,384 to 601,304 lpxL OKFHMN_03775: mdtG - multidrug efflux MFS transporter MdtG, at 601,731 to 602,702 mdtG Position (kb) 600 601 602Strain fitness (log2 ratio) -2 -1 0 1at 599.428 kb on - strand, within trhOat 599.469 kb on - strand, within trhOat 599.635 kb on - strand, within trhOat 599.882 kb on - strand, within trhOat 599.910 kb on - strand, within trhOat 599.910 kb on - strand, within trhOat 600.026 kb on - strand, within trhOat 600.344 kb on + strandat 600.344 kb on + strandat 600.348 kb on + strandat 601.302 kb on + strandat 601.302 kb on + strandat 601.438 kb on + strandat 601.584 kb on + strandat 601.635 kb on - strandat 601.662 kb on - strandat 602.249 kb on + strand, within mdtGat 602.282 kb on - strand, within mdtG

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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599,428 - trhO OKFHMN_03765 0.30 +0.9
599,469 - trhO OKFHMN_03765 0.34 -0.6
599,635 - trhO OKFHMN_03765 0.50 +0.6
599,882 - trhO OKFHMN_03765 0.74 -0.6
599,910 - trhO OKFHMN_03765 0.76 +0.2
599,910 - trhO OKFHMN_03765 0.76 -0.5
600,026 - trhO OKFHMN_03765 0.87 -0.0
600,344 + -1.6
600,344 + +0.9
600,348 + -0.2
601,302 + -0.0
601,302 + -2.2
601,438 + -2.4
601,584 + +0.9
601,635 - -1.3
601,662 - -1.0
602,249 + mdtG OKFHMN_03775 0.53 +1.1
602,282 - mdtG OKFHMN_03775 0.57 +0.1

Or see this region's nucleotide sequence