Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03440

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotD and cobB are separated by 155 nucleotidescobB and nagK are separated by 15 nucleotidesnagK and lolE are separated by 28 nucleotides OKFHMN_03435: potD - spermidine/putrescine ABC transporter substrate-binding protein PotD, at 535,445 to 536,491 potD OKFHMN_03440: cobB - NAD-dependent protein deacylase, at 536,647 to 537,468 cobB OKFHMN_03445: nagK - N-acetylglucosamine kinase, at 537,484 to 538,395 nagK OKFHMN_03450: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 538,424 to 539,662 lolE Position (kb) 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 535.673 kb on + strand, within potDat 535.697 kb on + strand, within potDat 535.697 kb on + strand, within potDat 535.700 kb on + strand, within potDat 536.071 kb on + strand, within potDat 536.908 kb on + strand, within cobBat 536.909 kb on - strand, within cobBat 536.952 kb on + strand, within cobBat 536.953 kb on - strand, within cobBat 537.049 kb on - strand, within cobBat 537.076 kb on + strand, within cobBat 537.376 kb on - strand, within cobBat 537.795 kb on - strand, within nagKat 537.795 kb on - strand, within nagKat 537.948 kb on - strand, within nagKat 538.170 kb on - strand, within nagKat 538.170 kb on - strand, within nagKat 538.392 kb on - strandat 538.392 kb on - strandat 538.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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535,673 + potD OKFHMN_03435 0.22 +0.0
535,697 + potD OKFHMN_03435 0.24 -1.8
535,697 + potD OKFHMN_03435 0.24 +0.9
535,700 + potD OKFHMN_03435 0.24 +1.9
536,071 + potD OKFHMN_03435 0.60 -0.5
536,908 + cobB OKFHMN_03440 0.32 -0.2
536,909 - cobB OKFHMN_03440 0.32 +0.6
536,952 + cobB OKFHMN_03440 0.37 -0.0
536,953 - cobB OKFHMN_03440 0.37 +0.3
537,049 - cobB OKFHMN_03440 0.49 +1.0
537,076 + cobB OKFHMN_03440 0.52 -2.8
537,376 - cobB OKFHMN_03440 0.89 +0.9
537,795 - nagK OKFHMN_03445 0.34 +0.7
537,795 - nagK OKFHMN_03445 0.34 +1.3
537,948 - nagK OKFHMN_03445 0.51 -0.3
538,170 - nagK OKFHMN_03445 0.75 -0.2
538,170 - nagK OKFHMN_03445 0.75 -2.4
538,392 - +0.0
538,392 - -0.6
538,416 + -0.6

Or see this region's nucleotide sequence