Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_03410 and OKFHMN_03415 are separated by 177 nucleotides OKFHMN_03415 and OKFHMN_03420 are separated by 61 nucleotides OKFHMN_03420 and OKFHMN_03425 overlap by 32 nucleotides
OKFHMN_03410: OKFHMN_03410 - hypothetical protein, at 532,032 to 532,547
_03410
OKFHMN_03415: OKFHMN_03415 - 3'-5' exoribonuclease, at 532,725 to 533,069
_03415
OKFHMN_03420: OKFHMN_03420 - excisionase, at 533,131 to 533,400
_03420
OKFHMN_03425: OKFHMN_03425 - integrase, at 533,369 to 534,487
_03425
Position (kb) 533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.231 kb on - strand, within OKFHMN_03410 at 532.299 kb on - strand, within OKFHMN_03410 at 532.300 kb on + strand, within OKFHMN_03410 at 532.372 kb on + strand, within OKFHMN_03410 at 532.373 kb on - strand, within OKFHMN_03410 at 532.415 kb on + strand, within OKFHMN_03410 at 532.534 kb on - strand at 533.097 kb on + strand at 533.274 kb on - strand, within OKFHMN_03420 at 533.544 kb on + strand, within OKFHMN_03425 at 534.034 kb on + strand, within OKFHMN_03425 at 534.185 kb on - strand, within OKFHMN_03425 at 534.218 kb on + strand, within OKFHMN_03425
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 532,231 - OKFHMN_03410 0.39 -0.2 532,299 - OKFHMN_03410 0.52 -2.7 532,300 + OKFHMN_03410 0.52 -3.3 532,372 + OKFHMN_03410 0.66 -0.5 532,373 - OKFHMN_03410 0.66 +0.5 532,415 + OKFHMN_03410 0.74 +1.5 532,534 - -2.3 533,097 + -1.0 533,274 - OKFHMN_03420 0.53 +0.4 533,544 + OKFHMN_03425 0.16 -1.5 534,034 + OKFHMN_03425 0.59 +0.5 534,185 - OKFHMN_03425 0.73 +1.8 534,218 + OKFHMN_03425 0.76 +1.9
Or see this region's nucleotide sequence