Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02640

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciQ and yciO are separated by 27 nucleotidesyciO and yciV overlap by 4 nucleotides OKFHMN_02635: yciQ - Uncharacterized protein YciQ, at 417,566 to 419,149 yciQ OKFHMN_02640: yciO - L-threonylcarbamoyladenylate synthase, at 419,177 to 419,797 yciO OKFHMN_02645: yciV - 5'-3' exoribonuclease, at 419,794 to 420,675 yciV Position (kb) 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 418.361 kb on + strand, within yciQat 418.361 kb on + strand, within yciQat 418.401 kb on - strand, within yciQat 418.923 kb on - strand, within yciQat 419.059 kb on - strandat 419.059 kb on - strandat 419.091 kb on - strandat 419.115 kb on - strandat 419.181 kb on - strandat 419.507 kb on - strand, within yciOat 419.509 kb on - strand, within yciOat 419.968 kb on - strand, within yciVat 420.089 kb on - strand, within yciVat 420.141 kb on + strand, within yciVat 420.308 kb on - strand, within yciVat 420.308 kb on - strand, within yciVat 420.427 kb on - strand, within yciV

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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418,361 + yciQ OKFHMN_02635 0.50 -1.0
418,361 + yciQ OKFHMN_02635 0.50 +0.5
418,401 - yciQ OKFHMN_02635 0.53 +0.6
418,923 - yciQ OKFHMN_02635 0.86 +0.2
419,059 - -2.6
419,059 - +0.0
419,091 - -2.9
419,115 - +1.0
419,181 - -1.6
419,507 - yciO OKFHMN_02640 0.53 -0.6
419,509 - yciO OKFHMN_02640 0.53 -0.8
419,968 - yciV OKFHMN_02645 0.20 +0.1
420,089 - yciV OKFHMN_02645 0.33 +0.3
420,141 + yciV OKFHMN_02645 0.39 +2.0
420,308 - yciV OKFHMN_02645 0.58 +2.8
420,308 - yciV OKFHMN_02645 0.58 +0.3
420,427 - yciV OKFHMN_02645 0.72 +0.3

Or see this region's nucleotide sequence