Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02440

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpuuC and puuR are separated by 149 nucleotidespuuR and puuD are separated by 26 nucleotidespuuD and puuA are separated by 211 nucleotides OKFHMN_02430: puuC - aldehyde dehydrogenase PuuC, at 372,878 to 374,365 puuC OKFHMN_02435: puuR - HTH-type transcriptional regulator PuuR, at 374,515 to 375,072 puuR OKFHMN_02440: puuD - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 375,099 to 375,863 puuD OKFHMN_02445: puuA - glutamate-putrescine ligase, at 376,075 to 377,493 puuA Position (kb) 375 376Strain fitness (log2 ratio) -2 -1 0 1 2 3at 374.116 kb on + strand, within puuCat 374.116 kb on + strand, within puuCat 374.282 kb on - strandat 374.393 kb on + strandat 374.395 kb on + strandat 374.396 kb on - strandat 374.517 kb on - strandat 374.599 kb on - strand, within puuRat 374.655 kb on + strand, within puuRat 374.701 kb on - strand, within puuRat 374.819 kb on - strand, within puuRat 374.897 kb on + strand, within puuRat 374.898 kb on - strand, within puuRat 374.953 kb on + strand, within puuRat 374.965 kb on - strand, within puuRat 375.567 kb on + strand, within puuDat 375.629 kb on - strand, within puuDat 375.667 kb on + strand, within puuDat 375.668 kb on - strand, within puuDat 376.325 kb on + strand, within puuAat 376.325 kb on + strand, within puuA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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374,116 + puuC OKFHMN_02430 0.83 -2.5
374,116 + puuC OKFHMN_02430 0.83 -1.7
374,282 - -2.1
374,393 + -0.9
374,395 + +0.1
374,396 - +0.4
374,517 - +0.8
374,599 - puuR OKFHMN_02435 0.15 -1.9
374,655 + puuR OKFHMN_02435 0.25 -0.1
374,701 - puuR OKFHMN_02435 0.33 -1.8
374,819 - puuR OKFHMN_02435 0.54 -0.3
374,897 + puuR OKFHMN_02435 0.68 -0.5
374,898 - puuR OKFHMN_02435 0.69 +1.7
374,953 + puuR OKFHMN_02435 0.78 -0.1
374,965 - puuR OKFHMN_02435 0.81 -0.7
375,567 + puuD OKFHMN_02440 0.61 -0.1
375,629 - puuD OKFHMN_02440 0.69 +2.8
375,667 + puuD OKFHMN_02440 0.74 +1.2
375,668 - puuD OKFHMN_02440 0.74 -1.4
376,325 + puuA OKFHMN_02445 0.18 +0.4
376,325 + puuA OKFHMN_02445 0.18 -1.9

Or see this region's nucleotide sequence