Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pspE and pspD are separated by 74 nucleotides pspD and pspC are separated by 8 nucleotides pspC and pspB overlap by 1 nucleotides pspB and pspA are separated by 53 nucleotides pspA and pspF are separated by 166 nucleotides
OKFHMN_02390: pspE - thiosulfate sulfurtransferase PspE, at 367,094 to 367,408
pspE
OKFHMN_02395: pspD - phage shock protein PspD, at 367,483 to 367,704
pspD
OKFHMN_02400: pspC - envelope stress response membrane protein PspC, at 367,713 to 368,072
pspC
OKFHMN_02405: pspB - envelope stress response membrane protein PspB, at 368,072 to 368,296
pspB
OKFHMN_02410: pspA - phage shock protein PspA, at 368,350 to 369,018
pspA
OKFHMN_02415: pspF - phage shock protein operon transcriptional activator, at 369,185 to 370,162
pspF
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.763 kb on - strand, within pspC at 368.349 kb on - strand at 368.352 kb on - strand at 368.381 kb on - strand at 368.497 kb on - strand, within pspA at 368.597 kb on - strand, within pspA at 368.597 kb on - strand, within pspA at 369.336 kb on - strand, within pspF at 369.618 kb on + strand, within pspF at 369.619 kb on - strand, within pspF at 369.702 kb on + strand, within pspF at 369.742 kb on + strand, within pspF
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 367,763 - pspC OKFHMN_02400 0.14 -1.3 368,349 - +0.4 368,352 - +0.0 368,381 - -0.2 368,497 - pspA OKFHMN_02410 0.22 -2.5 368,597 - pspA OKFHMN_02410 0.37 +2.0 368,597 - pspA OKFHMN_02410 0.37 -0.6 369,336 - pspF OKFHMN_02415 0.15 +1.3 369,618 + pspF OKFHMN_02415 0.44 -0.0 369,619 - pspF OKFHMN_02415 0.44 +0.5 369,702 + pspF OKFHMN_02415 0.53 +1.6 369,742 + pspF OKFHMN_02415 0.57 +0.6
Or see this region's nucleotide sequence