Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_01540 and ydcY are separated by 0 nucleotides ydcY and ortT are separated by 85 nucleotides ortT and patD are separated by 386 nucleotides patD and ydcV are separated by 21 nucleotides ydcV and potB overlap by 11 nucleotides
OKFHMN_01540: OKFHMN_01540 - Putative inner membrane exporter, YdcZ, at 216,972 to 217,421
_01540
OKFHMN_01545: ydcY - Uncharacterized protein YdcY, at 217,422 to 217,655
ydcY
OKFHMN_01550: ortT - orphan toxin OrtT, at 217,741 to 217,914
ortT
OKFHMN_01555: patD - aminobutyraldehyde dehydrogenase, at 218,301 to 219,725
patD
OKFHMN_01560: ydcV - Inner membrane ABC transporter permease protein YdcV, at 219,747 to 220,541
ydcV
OKFHMN_01565: potB - spermidine/putrescine ABC transporter permease, at 220,531 to 221,472
potB
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.420 kb on - strand at 218.140 kb on + strand at 218.174 kb on + strand at 218.360 kb on + strand at 218.361 kb on - strand at 218.651 kb on - strand, within patD at 218.651 kb on - strand, within patD at 218.653 kb on + strand, within patD at 219.465 kb on - strand, within patD at 219.816 kb on - strand at 220.000 kb on - strand, within ydcV at 220.095 kb on - strand, within ydcV at 220.108 kb on - strand, within ydcV at 220.231 kb on - strand, within ydcV
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 217,420 - +0.3 218,140 + +0.6 218,174 + +0.6 218,360 + +0.6 218,361 - -1.4 218,651 - patD OKFHMN_01555 0.25 -1.4 218,651 - patD OKFHMN_01555 0.25 -1.9 218,653 + patD OKFHMN_01555 0.25 -0.4 219,465 - patD OKFHMN_01555 0.82 +1.0 219,816 - +0.5 220,000 - ydcV OKFHMN_01560 0.32 +0.7 220,095 - ydcV OKFHMN_01560 0.44 -0.9 220,108 - ydcV OKFHMN_01560 0.45 +1.0 220,231 - ydcV OKFHMN_01560 0.61 +1.2
Or see this region's nucleotide sequence