Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01295

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgadC and digH are separated by 130 nucleotidesdigH and dosC are separated by 376 nucleotides OKFHMN_01290: gadC - acid resistance gamma-aminobutyrate antiporter GadC, at 159,322 to 160,857 gadC OKFHMN_01295: digH - Glycosyl hydrolase DigH, at 160,988 to 162,307 digH OKFHMN_01300: dosC - diguanylate cyclase DosC, at 162,684 to 164,066 dosC Position (kb) 160 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 160.828 kb on + strandat 160.830 kb on + strandat 160.856 kb on - strandat 160.859 kb on + strandat 160.873 kb on + strandat 160.875 kb on + strandat 160.875 kb on + strandat 161.990 kb on + strand, within digHat 162.246 kb on - strandat 162.281 kb on + strandat 162.305 kb on + strandat 162.615 kb on + strandat 162.671 kb on - strandat 163.194 kb on - strand, within dosCat 163.301 kb on - strand, within dosC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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160,828 + -0.2
160,830 + +0.5
160,856 - +0.6
160,859 + +1.0
160,873 + +1.1
160,875 + -0.5
160,875 + +3.6
161,990 + digH OKFHMN_01295 0.76 +0.3
162,246 - +0.4
162,281 + +0.2
162,305 + -3.1
162,615 + +0.3
162,671 - +1.9
163,194 - dosC OKFHMN_01300 0.37 +0.2
163,301 - dosC OKFHMN_01300 0.45 +0.3

Or see this region's nucleotide sequence