Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01275

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddA and yddB are separated by 37 nucleotidesyddB and pqqL are separated by 56 nucleotides OKFHMN_01270: yddA - Inner membrane ABC transporter ATP-binding protein YddA, at 150,497 to 152,155 yddA OKFHMN_01275: yddB - Uncharacterized protein YddB, at 152,193 to 154,565 yddB OKFHMN_01280: pqqL - putative zinc protease PqqL, at 154,622 to 157,405 pqqL Position (kb) 152 153 154 155Strain fitness (log2 ratio) -2 -1 0 1at 151.992 kb on + strandat 152.008 kb on + strandat 152.008 kb on + strandat 152.207 kb on + strandat 152.268 kb on + strandat 152.829 kb on - strand, within yddBat 153.219 kb on - strand, within yddBat 153.339 kb on + strand, within yddBat 153.553 kb on - strand, within yddBat 153.827 kb on + strand, within yddBat 154.049 kb on - strand, within yddBat 154.052 kb on + strand, within yddBat 154.078 kb on - strand, within yddBat 154.080 kb on - strand, within yddBat 154.153 kb on - strand, within yddBat 154.350 kb on + strandat 154.359 kb on + strandat 154.360 kb on - strandat 154.748 kb on - strandat 154.748 kb on - strandat 154.964 kb on + strand, within pqqLat 155.279 kb on - strand, within pqqL

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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151,992 + -1.6
152,008 + -0.3
152,008 + +0.2
152,207 + -1.4
152,268 + +0.8
152,829 - yddB OKFHMN_01275 0.27 +1.5
153,219 - yddB OKFHMN_01275 0.43 +0.2
153,339 + yddB OKFHMN_01275 0.48 +0.1
153,553 - yddB OKFHMN_01275 0.57 -0.5
153,827 + yddB OKFHMN_01275 0.69 -2.5
154,049 - yddB OKFHMN_01275 0.78 +0.2
154,052 + yddB OKFHMN_01275 0.78 -2.4
154,078 - yddB OKFHMN_01275 0.79 +0.1
154,080 - yddB OKFHMN_01275 0.80 +0.2
154,153 - yddB OKFHMN_01275 0.83 +0.5
154,350 + -0.7
154,359 + +0.3
154,360 - +0.6
154,748 - +0.0
154,748 - +0.1
154,964 + pqqL OKFHMN_01280 0.12 -0.7
155,279 - pqqL OKFHMN_01280 0.24 +0.2

Or see this region's nucleotide sequence