Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00205

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntehxD and ehxB are separated by 3 nucleotidesehxB and ehxA are separated by 49 nucleotides OKFHMN_00200: ehxD - enterohemolysin T1SS ABC transporter subunit EhxD, at 39,955 to 41,394 ehxD OKFHMN_00205: ehxB - enterohemolysin T1SS ABC transporter permease/ATPase EhxB, at 41,398 to 43,518 ehxB OKFHMN_00210: ehxA - enterohemolysin EhxA, at 43,568 to 46,564 ehxA Position (kb) 41 42 43 44Strain fitness (log2 ratio) -2 -1 0 1at 41.279 kb on + strandat 41.500 kb on + strandat 41.728 kb on - strand, within ehxBat 41.805 kb on + strand, within ehxBat 41.987 kb on - strand, within ehxBat 42.276 kb on + strand, within ehxBat 42.341 kb on - strand, within ehxBat 42.377 kb on - strand, within ehxBat 42.457 kb on - strand, within ehxBat 42.499 kb on + strand, within ehxBat 42.604 kb on - strand, within ehxBat 42.628 kb on + strand, within ehxBat 42.861 kb on + strand, within ehxBat 42.864 kb on + strand, within ehxBat 42.865 kb on - strand, within ehxBat 43.010 kb on - strand, within ehxBat 43.224 kb on - strand, within ehxBat 43.268 kb on + strand, within ehxBat 43.343 kb on + strandat 43.492 kb on - strandat 43.518 kb on + strandat 43.519 kb on - strandat 43.948 kb on + strand, within ehxAat 44.074 kb on + strand, within ehxAat 44.240 kb on - strand, within ehxAat 44.350 kb on + strand, within ehxA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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41,279 + -0.5
41,500 + -0.9
41,728 - ehxB OKFHMN_00205 0.16 +0.7
41,805 + ehxB OKFHMN_00205 0.19 -0.1
41,987 - ehxB OKFHMN_00205 0.28 -0.2
42,276 + ehxB OKFHMN_00205 0.41 +0.3
42,341 - ehxB OKFHMN_00205 0.44 -0.3
42,377 - ehxB OKFHMN_00205 0.46 -0.9
42,457 - ehxB OKFHMN_00205 0.50 -0.9
42,499 + ehxB OKFHMN_00205 0.52 -0.7
42,604 - ehxB OKFHMN_00205 0.57 -1.3
42,628 + ehxB OKFHMN_00205 0.58 -0.6
42,861 + ehxB OKFHMN_00205 0.69 -0.5
42,864 + ehxB OKFHMN_00205 0.69 +0.5
42,865 - ehxB OKFHMN_00205 0.69 -0.1
43,010 - ehxB OKFHMN_00205 0.76 +1.5
43,224 - ehxB OKFHMN_00205 0.86 -1.0
43,268 + ehxB OKFHMN_00205 0.88 -1.2
43,343 + +0.1
43,492 - +0.4
43,518 + +1.1
43,519 - +0.9
43,948 + ehxA OKFHMN_00210 0.13 -2.2
44,074 + ehxA OKFHMN_00210 0.17 -0.5
44,240 - ehxA OKFHMN_00210 0.22 +0.3
44,350 + ehxA OKFHMN_00210 0.26 +0.9

Or see this region's nucleotide sequence