Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaN and priC are separated by 69 nucleotides priC and rsmS are separated by 13 nucleotides rsmS and mscK are separated by 211 nucleotides
BNILDI_22525: ybaN - DUF454 domain-containing protein, at 4,531,448 to 4,531,825
ybaN
BNILDI_22530: priC - primosomal replication protein N'', at 4,531,895 to 4,532,422
priC
BNILDI_22535: rsmS - pleiotropic regulatory protein RsmS, at 4,532,436 to 4,532,597
rsmS
BNILDI_22540: mscK - mechanosensitive channel MscK, at 4,532,809 to 4,536,171
mscK
Position (kb) 4532
4533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4531.492 kb on + strand, within ybaN at 4531.493 kb on - strand, within ybaN at 4531.494 kb on + strand, within ybaN at 4531.495 kb on - strand, within ybaN at 4531.650 kb on + strand, within ybaN at 4531.650 kb on + strand, within ybaN at 4531.651 kb on - strand, within ybaN at 4531.672 kb on - strand, within ybaN at 4531.672 kb on - strand, within ybaN at 4531.892 kb on - strand at 4532.225 kb on - strand, within priC at 4532.231 kb on - strand, within priC at 4532.413 kb on - strand at 4532.413 kb on - strand at 4532.435 kb on + strand at 4532.435 kb on + strand at 4532.436 kb on - strand at 4532.436 kb on - strand at 4532.436 kb on - strand at 4532.436 kb on - strand at 4532.546 kb on - strand, within rsmS at 4532.693 kb on + strand at 4532.787 kb on + strand at 4532.788 kb on - strand at 4532.788 kb on - strand at 4532.807 kb on + strand at 4532.811 kb on - strand at 4533.002 kb on + strand at 4533.003 kb on - strand at 4533.003 kb on - strand at 4533.115 kb on - strand at 4533.171 kb on + strand, within mscK at 4533.171 kb on + strand, within mscK at 4533.276 kb on + strand, within mscK at 4533.285 kb on + strand, within mscK at 4533.285 kb on + strand, within mscK at 4533.285 kb on + strand, within mscK at 4533.286 kb on - strand, within mscK at 4533.290 kb on - strand, within mscK at 4533.410 kb on - strand, within mscK at 4533.500 kb on + strand, within mscK at 4533.501 kb on - strand, within mscK at 4533.513 kb on + strand, within mscK at 4533.513 kb on + strand, within mscK at 4533.514 kb on - strand, within mscK at 4533.514 kb on - strand, within mscK at 4533.516 kb on + strand, within mscK at 4533.516 kb on + strand, within mscK at 4533.517 kb on - strand, within mscK at 4533.574 kb on + strand, within mscK
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,531,492 + ybaN BNILDI_22525 0.12 -0.3 4,531,493 - ybaN BNILDI_22525 0.12 +0.4 4,531,494 + ybaN BNILDI_22525 0.12 +0.6 4,531,495 - ybaN BNILDI_22525 0.12 -0.3 4,531,650 + ybaN BNILDI_22525 0.53 -0.5 4,531,650 + ybaN BNILDI_22525 0.53 +0.0 4,531,651 - ybaN BNILDI_22525 0.54 -1.1 4,531,672 - ybaN BNILDI_22525 0.59 +1.2 4,531,672 - ybaN BNILDI_22525 0.59 +0.3 4,531,892 - +0.2 4,532,225 - priC BNILDI_22530 0.62 -1.2 4,532,231 - priC BNILDI_22530 0.64 -0.2 4,532,413 - +0.3 4,532,413 - +1.0 4,532,435 + -0.0 4,532,435 + -0.0 4,532,436 - -4.3 4,532,436 - +0.3 4,532,436 - -0.6 4,532,436 - -0.4 4,532,546 - rsmS BNILDI_22535 0.68 +0.4 4,532,693 + -1.4 4,532,787 + +0.6 4,532,788 - -0.1 4,532,788 - +0.5 4,532,807 + -0.6 4,532,811 - +0.4 4,533,002 + +0.4 4,533,003 - +0.5 4,533,003 - +0.1 4,533,115 - +0.2 4,533,171 + mscK BNILDI_22540 0.11 +2.1 4,533,171 + mscK BNILDI_22540 0.11 -2.3 4,533,276 + mscK BNILDI_22540 0.14 -0.1 4,533,285 + mscK BNILDI_22540 0.14 +0.3 4,533,285 + mscK BNILDI_22540 0.14 -0.8 4,533,285 + mscK BNILDI_22540 0.14 -0.1 4,533,286 - mscK BNILDI_22540 0.14 -0.0 4,533,290 - mscK BNILDI_22540 0.14 +0.4 4,533,410 - mscK BNILDI_22540 0.18 +0.2 4,533,500 + mscK BNILDI_22540 0.21 -0.6 4,533,501 - mscK BNILDI_22540 0.21 -0.1 4,533,513 + mscK BNILDI_22540 0.21 -1.8 4,533,513 + mscK BNILDI_22540 0.21 -4.2 4,533,514 - mscK BNILDI_22540 0.21 -1.0 4,533,514 - mscK BNILDI_22540 0.21 +0.1 4,533,516 + mscK BNILDI_22540 0.21 +1.2 4,533,516 + mscK BNILDI_22540 0.21 -0.2 4,533,517 - mscK BNILDI_22540 0.21 +1.1 4,533,574 + mscK BNILDI_22540 0.23 +2.3
Or see this region's nucleotide sequence