Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_22180 and yfdT overlap by 1 nucleotides yfdT and Arg_trna are separated by 291 nucleotides Arg_trna and fimZ are separated by 242 nucleotides fimZ and sfmF are separated by 2 nucleotides sfmF and fimH are separated by 10 nucleotides
BNILDI_22180: BNILDI_22180 - Uncharacterized protein YfdS, at 4,458,526 to 4,458,888
_22180
BNILDI_22185: yfdT - Uncharacterized protein YfdT, at 4,458,888 to 4,459,193
yfdT
BNILDI_22190: Arg_trna - tRNA-Arg(tct), at 4,459,485 to 4,459,561
_trna
BNILDI_22195: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 4,459,804 to 4,460,436
fimZ
BNILDI_22200: sfmF - fimbria assembly protein, at 4,460,439 to 4,460,954
sfmF
BNILDI_22205: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 4,460,965 to 4,461,972
fimH
Position (kb) 4459
4460
4461 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4458.905 kb on + strand at 4458.918 kb on - strand at 4459.063 kb on + strand, within yfdT at 4459.064 kb on - strand, within yfdT at 4459.067 kb on - strand, within yfdT at 4459.067 kb on - strand, within yfdT at 4459.101 kb on + strand, within yfdT at 4459.101 kb on + strand, within yfdT at 4459.102 kb on - strand, within yfdT at 4459.102 kb on - strand, within yfdT at 4459.191 kb on + strand at 4459.192 kb on - strand at 4459.202 kb on + strand at 4459.202 kb on + strand at 4459.203 kb on - strand at 4459.203 kb on - strand at 4459.333 kb on + strand at 4459.346 kb on + strand at 4459.350 kb on + strand at 4459.350 kb on + strand at 4459.350 kb on + strand at 4459.351 kb on - strand at 4459.428 kb on - strand at 4459.583 kb on - strand at 4459.735 kb on - strand at 4459.828 kb on - strand at 4459.833 kb on + strand at 4459.834 kb on - strand at 4459.842 kb on + strand at 4459.843 kb on - strand at 4460.075 kb on - strand, within fimZ at 4460.090 kb on + strand, within fimZ at 4460.553 kb on + strand, within sfmF at 4460.604 kb on - strand, within sfmF at 4460.604 kb on - strand, within sfmF at 4460.604 kb on - strand, within sfmF at 4460.604 kb on - strand, within sfmF at 4460.604 kb on - strand, within sfmF at 4460.607 kb on - strand, within sfmF at 4460.607 kb on - strand, within sfmF at 4460.607 kb on - strand, within sfmF at 4460.611 kb on - strand, within sfmF at 4460.691 kb on + strand, within sfmF at 4460.736 kb on - strand, within sfmF at 4460.772 kb on + strand, within sfmF at 4460.784 kb on - strand, within sfmF at 4460.811 kb on - strand, within sfmF at 4460.830 kb on - strand, within sfmF at 4460.874 kb on - strand, within sfmF at 4460.987 kb on + strand at 4461.103 kb on - strand, within fimH at 4461.224 kb on + strand, within fimH at 4461.224 kb on + strand, within fimH at 4461.412 kb on - strand, within fimH at 4461.419 kb on + strand, within fimH
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,458,905 + +0.3 4,458,918 - +0.8 4,459,063 + yfdT BNILDI_22185 0.57 +0.9 4,459,064 - yfdT BNILDI_22185 0.58 -0.2 4,459,067 - yfdT BNILDI_22185 0.58 -0.3 4,459,067 - yfdT BNILDI_22185 0.58 +0.3 4,459,101 + yfdT BNILDI_22185 0.70 +0.6 4,459,101 + yfdT BNILDI_22185 0.70 -0.1 4,459,102 - yfdT BNILDI_22185 0.70 +0.2 4,459,102 - yfdT BNILDI_22185 0.70 +1.1 4,459,191 + +1.8 4,459,192 - +0.0 4,459,202 + +0.8 4,459,202 + -0.8 4,459,203 - -0.4 4,459,203 - -0.7 4,459,333 + +0.2 4,459,346 + +1.0 4,459,350 + +0.3 4,459,350 + +0.1 4,459,350 + -0.5 4,459,351 - -1.0 4,459,428 - -2.2 4,459,583 - +0.6 4,459,735 - -1.0 4,459,828 - -1.1 4,459,833 + -2.5 4,459,834 - -1.0 4,459,842 + -0.7 4,459,843 - +0.3 4,460,075 - fimZ BNILDI_22195 0.43 +0.1 4,460,090 + fimZ BNILDI_22195 0.45 -0.2 4,460,553 + sfmF BNILDI_22200 0.22 -1.3 4,460,604 - sfmF BNILDI_22200 0.32 +0.3 4,460,604 - sfmF BNILDI_22200 0.32 +0.7 4,460,604 - sfmF BNILDI_22200 0.32 +0.6 4,460,604 - sfmF BNILDI_22200 0.32 -1.2 4,460,604 - sfmF BNILDI_22200 0.32 +1.1 4,460,607 - sfmF BNILDI_22200 0.33 -1.4 4,460,607 - sfmF BNILDI_22200 0.33 -1.9 4,460,607 - sfmF BNILDI_22200 0.33 +0.6 4,460,611 - sfmF BNILDI_22200 0.33 +1.3 4,460,691 + sfmF BNILDI_22200 0.49 +3.3 4,460,736 - sfmF BNILDI_22200 0.58 -0.6 4,460,772 + sfmF BNILDI_22200 0.65 -0.2 4,460,784 - sfmF BNILDI_22200 0.67 -1.6 4,460,811 - sfmF BNILDI_22200 0.72 +0.3 4,460,830 - sfmF BNILDI_22200 0.76 -1.7 4,460,874 - sfmF BNILDI_22200 0.84 -2.6 4,460,987 + -1.8 4,461,103 - fimH BNILDI_22205 0.14 +1.9 4,461,224 + fimH BNILDI_22205 0.26 +0.8 4,461,224 + fimH BNILDI_22205 0.26 -0.8 4,461,412 - fimH BNILDI_22205 0.44 -0.6 4,461,419 + fimH BNILDI_22205 0.45 +0.3
Or see this region's nucleotide sequence