Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhL and moaE are separated by 136 nucleotides moaE and moaD are separated by 1 nucleotides moaD and moaC overlap by 8 nucleotides moaC and moaB are separated by 2 nucleotides
BNILDI_20980: ybhL - Inner membrane protein YbhL, at 4,223,750 to 4,224,454
ybhL
BNILDI_20985: moaE - molybdopterin synthase catalytic subunit MoaE, at 4,224,591 to 4,225,043
moaE
BNILDI_20990: moaD - molybdopterin synthase sulfur carrier subunit, at 4,225,045 to 4,225,290
moaD
BNILDI_20995: moaC - cyclic pyranopterin monophosphate synthase MoaC, at 4,225,283 to 4,225,768
moaC
BNILDI_21000: moaB - molybdenum cofactor biosynthesis protein B, at 4,225,771 to 4,226,283
moaB
Position (kb) 4224
4225
4226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4223.685 kb on - strand at 4223.904 kb on + strand, within ybhL at 4223.940 kb on + strand, within ybhL at 4223.941 kb on - strand, within ybhL at 4223.944 kb on + strand, within ybhL at 4224.020 kb on - strand, within ybhL at 4224.020 kb on - strand, within ybhL at 4224.112 kb on + strand, within ybhL at 4224.121 kb on + strand, within ybhL at 4224.146 kb on + strand, within ybhL at 4224.146 kb on + strand, within ybhL at 4224.147 kb on - strand, within ybhL at 4224.147 kb on - strand, within ybhL at 4224.147 kb on - strand, within ybhL at 4224.160 kb on + strand, within ybhL at 4224.161 kb on - strand, within ybhL at 4224.203 kb on + strand, within ybhL at 4224.254 kb on + strand, within ybhL at 4224.394 kb on + strand at 4224.395 kb on - strand at 4224.396 kb on + strand at 4224.396 kb on + strand at 4224.397 kb on - strand at 4224.423 kb on - strand at 4224.473 kb on + strand at 4224.481 kb on - strand at 4224.492 kb on - strand at 4224.527 kb on + strand at 4224.537 kb on + strand at 4224.538 kb on - strand at 4224.695 kb on - strand, within moaE at 4224.704 kb on + strand, within moaE at 4224.705 kb on - strand, within moaE at 4225.361 kb on - strand, within moaC at 4225.390 kb on - strand, within moaC at 4225.464 kb on - strand, within moaC at 4225.464 kb on - strand, within moaC at 4225.607 kb on + strand, within moaC at 4225.608 kb on - strand, within moaC at 4225.636 kb on + strand, within moaC at 4225.769 kb on - strand at 4225.769 kb on - strand at 4225.769 kb on - strand at 4225.772 kb on + strand at 4225.772 kb on + strand at 4225.773 kb on - strand at 4225.773 kb on - strand at 4225.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,223,685 - -2.0 4,223,904 + ybhL BNILDI_20980 0.22 -0.6 4,223,940 + ybhL BNILDI_20980 0.27 -1.3 4,223,941 - ybhL BNILDI_20980 0.27 -0.7 4,223,944 + ybhL BNILDI_20980 0.28 -2.9 4,224,020 - ybhL BNILDI_20980 0.38 +0.0 4,224,020 - ybhL BNILDI_20980 0.38 +0.7 4,224,112 + ybhL BNILDI_20980 0.51 +0.2 4,224,121 + ybhL BNILDI_20980 0.53 +0.7 4,224,146 + ybhL BNILDI_20980 0.56 -0.3 4,224,146 + ybhL BNILDI_20980 0.56 -0.1 4,224,147 - ybhL BNILDI_20980 0.56 +1.0 4,224,147 - ybhL BNILDI_20980 0.56 -2.8 4,224,147 - ybhL BNILDI_20980 0.56 +1.4 4,224,160 + ybhL BNILDI_20980 0.58 -2.4 4,224,161 - ybhL BNILDI_20980 0.58 -0.5 4,224,203 + ybhL BNILDI_20980 0.64 +0.5 4,224,254 + ybhL BNILDI_20980 0.71 -0.2 4,224,394 + +0.3 4,224,395 - -0.1 4,224,396 + +0.4 4,224,396 + +0.6 4,224,397 - -0.1 4,224,423 - -0.1 4,224,473 + -0.0 4,224,481 - -2.4 4,224,492 - -1.0 4,224,527 + -0.9 4,224,537 + -0.2 4,224,538 - +1.7 4,224,695 - moaE BNILDI_20985 0.23 +2.0 4,224,704 + moaE BNILDI_20985 0.25 +0.2 4,224,705 - moaE BNILDI_20985 0.25 -0.2 4,225,361 - moaC BNILDI_20995 0.16 -2.0 4,225,390 - moaC BNILDI_20995 0.22 +0.3 4,225,464 - moaC BNILDI_20995 0.37 -0.2 4,225,464 - moaC BNILDI_20995 0.37 -1.9 4,225,607 + moaC BNILDI_20995 0.67 -0.8 4,225,608 - moaC BNILDI_20995 0.67 -0.6 4,225,636 + moaC BNILDI_20995 0.73 +0.2 4,225,769 - -0.9 4,225,769 - -0.1 4,225,769 - +1.5 4,225,772 + -0.7 4,225,772 + -0.0 4,225,773 - -1.5 4,225,773 - -1.1 4,225,773 - +0.3
Or see this region's nucleotide sequence