Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnH and glnP are separated by 138 nucleotides glnP and glnQ overlap by 4 nucleotides glnQ and ybiO are separated by 116 nucleotides
BNILDI_20840: glnH - glutamine ABC transporter substrate-binding protein GlnH, at 4,196,479 to 4,197,225
glnH
BNILDI_20845: glnP - glutamine ABC transporter permease GlnP, at 4,197,364 to 4,198,023
glnP
BNILDI_20850: glnQ - glutamine ABC transporter ATP-binding protein GlnQ, at 4,198,020 to 4,198,742
glnQ
BNILDI_20855: ybiO - mechanosensitive channel protein, at 4,198,859 to 4,201,084
ybiO
Position (kb) 4198
4199 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4197.181 kb on + strand at 4197.232 kb on + strand at 4197.240 kb on + strand at 4197.241 kb on - strand at 4197.282 kb on + strand at 4197.283 kb on - strand at 4197.283 kb on - strand at 4197.317 kb on - strand at 4197.321 kb on - strand at 4197.339 kb on + strand at 4197.339 kb on + strand at 4197.363 kb on + strand at 4197.364 kb on - strand at 4197.364 kb on - strand at 4197.364 kb on - strand at 4197.562 kb on - strand, within glnP at 4197.562 kb on - strand, within glnP at 4197.582 kb on + strand, within glnP at 4197.582 kb on + strand, within glnP at 4197.583 kb on - strand, within glnP at 4197.586 kb on + strand, within glnP at 4197.587 kb on - strand, within glnP at 4197.609 kb on + strand, within glnP at 4197.618 kb on - strand, within glnP at 4197.618 kb on - strand, within glnP at 4197.634 kb on - strand, within glnP at 4197.673 kb on + strand, within glnP at 4197.773 kb on - strand, within glnP at 4197.801 kb on + strand, within glnP at 4197.963 kb on + strand at 4197.985 kb on - strand at 4198.278 kb on + strand, within glnQ at 4198.740 kb on + strand at 4198.740 kb on + strand at 4198.819 kb on + strand at 4198.820 kb on - strand at 4198.820 kb on - strand at 4198.822 kb on - strand at 4198.822 kb on - strand at 4198.822 kb on - strand at 4198.826 kb on - strand at 4198.931 kb on - strand at 4199.210 kb on + strand, within ybiO at 4199.236 kb on + strand, within ybiO at 4199.245 kb on + strand, within ybiO at 4199.298 kb on + strand, within ybiO at 4199.298 kb on + strand, within ybiO at 4199.298 kb on + strand, within ybiO at 4199.298 kb on + strand, within ybiO at 4199.432 kb on - strand, within ybiO at 4199.432 kb on - strand, within ybiO at 4199.463 kb on + strand, within ybiO at 4199.463 kb on + strand, within ybiO at 4199.464 kb on - strand, within ybiO at 4199.464 kb on - strand, within ybiO at 4199.479 kb on - strand, within ybiO at 4199.719 kb on + strand, within ybiO at 4199.733 kb on + strand, within ybiO at 4199.734 kb on - strand, within ybiO at 4199.740 kb on - strand, within ybiO
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,197,181 + +1.6 4,197,232 + +0.3 4,197,240 + -0.7 4,197,241 - +0.1 4,197,282 + -0.3 4,197,283 - -0.4 4,197,283 - -1.9 4,197,317 - -0.4 4,197,321 - +0.1 4,197,339 + -1.0 4,197,339 + +2.5 4,197,363 + +1.1 4,197,364 - +0.6 4,197,364 - -0.9 4,197,364 - +0.6 4,197,562 - glnP BNILDI_20845 0.30 -0.2 4,197,562 - glnP BNILDI_20845 0.30 +0.2 4,197,582 + glnP BNILDI_20845 0.33 +0.4 4,197,582 + glnP BNILDI_20845 0.33 +0.4 4,197,583 - glnP BNILDI_20845 0.33 +0.1 4,197,586 + glnP BNILDI_20845 0.34 +1.3 4,197,587 - glnP BNILDI_20845 0.34 +0.6 4,197,609 + glnP BNILDI_20845 0.37 +0.3 4,197,618 - glnP BNILDI_20845 0.38 -1.4 4,197,618 - glnP BNILDI_20845 0.38 +0.0 4,197,634 - glnP BNILDI_20845 0.41 +1.4 4,197,673 + glnP BNILDI_20845 0.47 -2.4 4,197,773 - glnP BNILDI_20845 0.62 -0.0 4,197,801 + glnP BNILDI_20845 0.66 +0.1 4,197,963 + +0.1 4,197,985 - -0.3 4,198,278 + glnQ BNILDI_20850 0.36 -1.4 4,198,740 + +0.4 4,198,740 + -0.4 4,198,819 + +1.0 4,198,820 - -0.7 4,198,820 - -0.0 4,198,822 - -0.1 4,198,822 - -0.1 4,198,822 - +0.6 4,198,826 - +1.9 4,198,931 - -0.2 4,199,210 + ybiO BNILDI_20855 0.16 -0.1 4,199,236 + ybiO BNILDI_20855 0.17 +0.2 4,199,245 + ybiO BNILDI_20855 0.17 +0.6 4,199,298 + ybiO BNILDI_20855 0.20 +0.2 4,199,298 + ybiO BNILDI_20855 0.20 +0.1 4,199,298 + ybiO BNILDI_20855 0.20 +0.4 4,199,298 + ybiO BNILDI_20855 0.20 +0.0 4,199,432 - ybiO BNILDI_20855 0.26 +0.4 4,199,432 - ybiO BNILDI_20855 0.26 -1.9 4,199,463 + ybiO BNILDI_20855 0.27 -0.3 4,199,463 + ybiO BNILDI_20855 0.27 +0.1 4,199,464 - ybiO BNILDI_20855 0.27 +0.8 4,199,464 - ybiO BNILDI_20855 0.27 -0.9 4,199,479 - ybiO BNILDI_20855 0.28 +0.9 4,199,719 + ybiO BNILDI_20855 0.39 +1.8 4,199,733 + ybiO BNILDI_20855 0.39 +0.6 4,199,734 - ybiO BNILDI_20855 0.39 -0.1 4,199,740 - ybiO BNILDI_20855 0.40 +0.1
Or see this region's nucleotide sequence