Strain Fitness in Escherichia coli ECRC62 around BNILDI_20195
Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Casamino-acids |
|---|---|---|---|---|---|
| remove | |||||
| 4,055,021 | + | ompF_G141E | BNILDI_20190 | 0.30 | +0.8 |
| 4,055,022 | - | ompF_G141E | BNILDI_20190 | 0.30 | +1.2 |
| 4,055,026 | - | ompF_G141E | BNILDI_20190 | 0.31 | +1.0 |
| 4,055,061 | + | ompF_G141E | BNILDI_20190 | 0.34 | +0.6 |
| 4,055,061 | + | ompF_G141E | BNILDI_20190 | 0.34 | +0.8 |
| 4,055,062 | - | ompF_G141E | BNILDI_20190 | 0.34 | -3.8 |
| 4,055,073 | + | ompF_G141E | BNILDI_20190 | 0.35 | +0.6 |
| 4,055,089 | - | ompF_G141E | BNILDI_20190 | 0.36 | -1.9 |
| 4,055,127 | + | ompF_G141E | BNILDI_20190 | 0.40 | -0.1 |
| 4,055,169 | - | ompF_G141E | BNILDI_20190 | 0.44 | +0.4 |
| 4,055,169 | - | ompF_G141E | BNILDI_20190 | 0.44 | +1.1 |
| 4,055,172 | + | ompF_G141E | BNILDI_20190 | 0.44 | +0.2 |
| 4,055,172 | + | ompF_G141E | BNILDI_20190 | 0.44 | -0.2 |
| 4,055,173 | - | ompF_G141E | BNILDI_20190 | 0.44 | -3.0 |
| 4,055,173 | - | ompF_G141E | BNILDI_20190 | 0.44 | -1.9 |
| 4,055,234 | + | ompF_G141E | BNILDI_20190 | 0.50 | +0.3 |
| 4,055,403 | - | ompF_G141E | BNILDI_20190 | 0.65 | -2.0 |
| 4,055,416 | - | ompF_G141E | BNILDI_20190 | 0.66 | -0.4 |
| 4,055,433 | + | ompF_G141E | BNILDI_20190 | 0.68 | +1.4 |
| 4,055,433 | + | ompF_G141E | BNILDI_20190 | 0.68 | -0.0 |
| 4,055,448 | + | ompF_G141E | BNILDI_20190 | 0.69 | -0.4 |
| 4,055,448 | + | ompF_G141E | BNILDI_20190 | 0.69 | +0.1 |
| 4,055,605 | + | ompF_G141E | BNILDI_20190 | 0.84 | +1.1 |
| 4,055,606 | - | ompF_G141E | BNILDI_20190 | 0.84 | +0.5 |
| 4,055,658 | + | ompF_G141E | BNILDI_20190 | 0.89 | -0.1 |
| 4,055,659 | - | ompF_G141E | BNILDI_20190 | 0.89 | +1.0 |
| 4,055,659 | - | ompF_G141E | BNILDI_20190 | 0.89 | +0.6 |
| 4,055,661 | + | ompF_G141E | BNILDI_20190 | 0.89 | +1.4 |
| 4,055,661 | + | ompF_G141E | BNILDI_20190 | 0.89 | +0.3 |
| 4,055,685 | + | -0.5 | |||
| 4,055,685 | + | +0.1 | |||
| 4,055,686 | - | +0.5 | |||
| 4,055,694 | + | -2.7 | |||
| 4,055,694 | + | +0.3 | |||
| 4,055,734 | + | +0.2 | |||
| 4,055,779 | - | -2.6 | |||
| 4,056,291 | - | aspC | BNILDI_20195 | 0.27 | -1.1 |
| 4,056,291 | - | aspC | BNILDI_20195 | 0.27 | -3.0 |
| 4,056,291 | - | aspC | BNILDI_20195 | 0.27 | +0.2 |
| 4,056,291 | - | aspC | BNILDI_20195 | 0.27 | -2.4 |
| 4,056,364 | - | aspC | BNILDI_20195 | 0.34 | +0.3 |
| 4,056,404 | - | aspC | BNILDI_20195 | 0.37 | -1.7 |
| 4,056,410 | - | aspC | BNILDI_20195 | 0.37 | +1.0 |
| 4,056,412 | + | aspC | BNILDI_20195 | 0.38 | -2.2 |
| 4,056,412 | + | aspC | BNILDI_20195 | 0.38 | +1.1 |
| 4,056,412 | + | aspC | BNILDI_20195 | 0.38 | -0.1 |
| 4,056,412 | + | aspC | BNILDI_20195 | 0.38 | -1.5 |
| 4,056,485 | + | aspC | BNILDI_20195 | 0.44 | -2.5 |
| 4,056,485 | + | aspC | BNILDI_20195 | 0.44 | -1.9 |
| 4,056,485 | + | aspC | BNILDI_20195 | 0.44 | -2.2 |
| 4,056,604 | + | aspC | BNILDI_20195 | 0.54 | -0.7 |
| 4,056,664 | - | aspC | BNILDI_20195 | 0.59 | -2.9 |
| 4,056,694 | + | aspC | BNILDI_20195 | 0.61 | -1.2 |
| 4,056,695 | - | aspC | BNILDI_20195 | 0.61 | -2.6 |
| 4,056,695 | - | aspC | BNILDI_20195 | 0.61 | -0.4 |
| 4,056,715 | + | aspC | BNILDI_20195 | 0.63 | -0.8 |
| 4,056,716 | - | aspC | BNILDI_20195 | 0.63 | -3.0 |
| 4,056,812 | - | aspC | BNILDI_20195 | 0.71 | -2.0 |
| 4,056,872 | + | aspC | BNILDI_20195 | 0.76 | -0.5 |
| 4,056,873 | - | aspC | BNILDI_20195 | 0.76 | -3.5 |
| 4,056,904 | - | aspC | BNILDI_20195 | 0.79 | -2.3 |
| 4,056,916 | - | aspC | BNILDI_20195 | 0.80 | -3.5 |
| 4,056,924 | + | aspC | BNILDI_20195 | 0.81 | -1.8 |
| 4,056,924 | + | aspC | BNILDI_20195 | 0.81 | -0.9 |
| 4,057,064 | + | -0.2 | |||
| 4,057,064 | + | -2.6 | |||
| 4,057,113 | + | -1.1 | |||
| 4,057,242 | + | -0.1 | |||
| 4,057,460 | + | gloC | BNILDI_20205 | 0.13 | -0.5 |
| 4,057,568 | + | gloC | BNILDI_20205 | 0.29 | -0.7 |
| 4,057,628 | + | gloC | BNILDI_20205 | 0.39 | +0.2 |
| 4,057,645 | - | gloC | BNILDI_20205 | 0.41 | -0.2 |
| 4,057,645 | - | gloC | BNILDI_20205 | 0.41 | +1.3 |
| 4,057,645 | - | gloC | BNILDI_20205 | 0.41 | +0.2 |
| 4,057,645 | - | gloC | BNILDI_20205 | 0.41 | -0.1 |
| 4,057,645 | - | gloC | BNILDI_20205 | 0.41 | +2.5 |
| 4,057,653 | + | gloC | BNILDI_20205 | 0.43 | +1.8 |
| 4,057,653 | + | gloC | BNILDI_20205 | 0.43 | -4.1 |
| 4,057,740 | - | gloC | BNILDI_20205 | 0.56 | +0.2 |
| 4,057,975 | - | -2.1 | |||
| 4,058,017 | + | +0.6 | |||
| 4,058,018 | - | -1.1 | |||
| 4,058,018 | - | -0.2 | |||
| 4,058,050 | - | +0.2 | |||
| 4,058,052 | + | +0.1 | |||
| 4,058,080 | + | +0.9 | |||
| 4,058,092 | + | -0.4 | |||
| 4,058,095 | + | -0.5 | |||
| 4,058,096 | - | -0.1 | |||
| 4,058,106 | + | ycbK | BNILDI_20210 | 0.10 | -0.9 |
| 4,058,107 | - | ycbK | BNILDI_20210 | 0.10 | +0.1 |
| 4,058,111 | + | ycbK | BNILDI_20210 | 0.11 | -2.5 |
| 4,058,129 | - | ycbK | BNILDI_20210 | 0.14 | -0.5 |
| 4,058,129 | - | ycbK | BNILDI_20210 | 0.14 | +0.2 |
| 4,058,149 | + | ycbK | BNILDI_20210 | 0.18 | +0.6 |
Or see this region's nucleotide sequence