Strain Fitness in Escherichia coli ECRC62 around BNILDI_20080

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_20070 and BNILDI_20075 are separated by 1 nucleotidesBNILDI_20075 and BNILDI_20080 are separated by 2 nucleotidesBNILDI_20080 and BNILDI_20085 overlap by 4 nucleotides BNILDI_20070: BNILDI_20070 - capsular biosynthesis protein, at 4,028,152 to 4,029,438 _20070 BNILDI_20075: BNILDI_20075 - capsular biosynthesis protein, at 4,029,440 to 4,029,997 _20075 BNILDI_20080: BNILDI_20080 - capsular biosynthesis protein, at 4,030,000 to 4,032,132 _20080 BNILDI_20085: BNILDI_20085 - capsular biosynthesis protein, at 4,032,129 to 4,033,340 _20085 Position (kb) 4029 4030 4031 4032 4033Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4029.651 kb on - strand, within BNILDI_20075at 4029.717 kb on + strand, within BNILDI_20075at 4029.969 kb on + strandat 4029.969 kb on + strandat 4030.097 kb on + strandat 4030.159 kb on + strandat 4030.160 kb on - strandat 4030.160 kb on - strandat 4030.173 kb on + strandat 4030.256 kb on - strand, within BNILDI_20080at 4030.268 kb on - strand, within BNILDI_20080at 4030.268 kb on - strand, within BNILDI_20080at 4030.341 kb on + strand, within BNILDI_20080at 4030.546 kb on - strand, within BNILDI_20080at 4030.546 kb on - strand, within BNILDI_20080at 4030.674 kb on - strand, within BNILDI_20080at 4030.842 kb on + strand, within BNILDI_20080at 4031.005 kb on - strand, within BNILDI_20080at 4031.027 kb on - strand, within BNILDI_20080at 4031.119 kb on + strand, within BNILDI_20080at 4031.119 kb on + strand, within BNILDI_20080at 4031.120 kb on - strand, within BNILDI_20080at 4031.163 kb on + strand, within BNILDI_20080at 4031.163 kb on + strand, within BNILDI_20080at 4031.164 kb on - strand, within BNILDI_20080at 4031.260 kb on - strand, within BNILDI_20080at 4031.260 kb on - strand, within BNILDI_20080at 4031.260 kb on - strand, within BNILDI_20080at 4031.268 kb on + strand, within BNILDI_20080at 4031.323 kb on + strand, within BNILDI_20080at 4031.324 kb on - strand, within BNILDI_20080at 4031.333 kb on + strand, within BNILDI_20080at 4031.349 kb on + strand, within BNILDI_20080at 4032.155 kb on + strandat 4032.222 kb on + strandat 4032.286 kb on + strand, within BNILDI_20085at 4032.286 kb on + strand, within BNILDI_20085at 4032.287 kb on - strand, within BNILDI_20085at 4032.290 kb on + strand, within BNILDI_20085at 4032.291 kb on - strand, within BNILDI_20085at 4032.291 kb on - strand, within BNILDI_20085at 4032.291 kb on - strand, within BNILDI_20085at 4032.291 kb on - strand, within BNILDI_20085at 4032.562 kb on + strand, within BNILDI_20085at 4032.633 kb on - strand, within BNILDI_20085at 4032.768 kb on - strand, within BNILDI_20085at 4032.820 kb on - strand, within BNILDI_20085at 4032.885 kb on - strand, within BNILDI_20085at 4032.982 kb on + strand, within BNILDI_20085at 4032.982 kb on + strand, within BNILDI_20085at 4032.982 kb on + strand, within BNILDI_20085at 4032.982 kb on + strand, within BNILDI_20085at 4032.982 kb on + strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.983 kb on - strand, within BNILDI_20085at 4032.987 kb on - strand, within BNILDI_20085at 4032.987 kb on - strand, within BNILDI_20085at 4033.061 kb on + strand, within BNILDI_20085at 4033.071 kb on + strand, within BNILDI_20085at 4033.071 kb on + strand, within BNILDI_20085at 4033.071 kb on + strand, within BNILDI_20085at 4033.073 kb on + strand, within BNILDI_20085at 4033.074 kb on - strand, within BNILDI_20085at 4033.074 kb on - strand, within BNILDI_20085at 4033.074 kb on - strand, within BNILDI_20085

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,029,651 - BNILDI_20075 0.38 -0.6
4,029,717 + BNILDI_20075 0.50 -0.9
4,029,969 + -2.7
4,029,969 + -1.7
4,030,097 + +0.5
4,030,159 + -0.0
4,030,160 - -0.6
4,030,160 - -0.1
4,030,173 + -0.2
4,030,256 - BNILDI_20080 0.12 -0.0
4,030,268 - BNILDI_20080 0.13 +0.0
4,030,268 - BNILDI_20080 0.13 +0.2
4,030,341 + BNILDI_20080 0.16 -1.3
4,030,546 - BNILDI_20080 0.26 -0.3
4,030,546 - BNILDI_20080 0.26 +0.0
4,030,674 - BNILDI_20080 0.32 -0.7
4,030,842 + BNILDI_20080 0.39 +0.5
4,031,005 - BNILDI_20080 0.47 +1.3
4,031,027 - BNILDI_20080 0.48 +1.9
4,031,119 + BNILDI_20080 0.52 -0.0
4,031,119 + BNILDI_20080 0.52 -0.3
4,031,120 - BNILDI_20080 0.53 +0.2
4,031,163 + BNILDI_20080 0.55 +0.4
4,031,163 + BNILDI_20080 0.55 +0.5
4,031,164 - BNILDI_20080 0.55 +0.0
4,031,260 - BNILDI_20080 0.59 +0.2
4,031,260 - BNILDI_20080 0.59 -2.4
4,031,260 - BNILDI_20080 0.59 -0.4
4,031,268 + BNILDI_20080 0.59 -1.5
4,031,323 + BNILDI_20080 0.62 -2.7
4,031,324 - BNILDI_20080 0.62 -1.6
4,031,333 + BNILDI_20080 0.62 -0.3
4,031,349 + BNILDI_20080 0.63 +1.4
4,032,155 + -1.0
4,032,222 + -1.5
4,032,286 + BNILDI_20085 0.13 +0.9
4,032,286 + BNILDI_20085 0.13 +0.6
4,032,287 - BNILDI_20085 0.13 -1.2
4,032,290 + BNILDI_20085 0.13 -0.4
4,032,291 - BNILDI_20085 0.13 +0.2
4,032,291 - BNILDI_20085 0.13 -1.1
4,032,291 - BNILDI_20085 0.13 +1.1
4,032,291 - BNILDI_20085 0.13 +0.1
4,032,562 + BNILDI_20085 0.36 +0.3
4,032,633 - BNILDI_20085 0.42 -0.1
4,032,768 - BNILDI_20085 0.53 +0.3
4,032,820 - BNILDI_20085 0.57 +0.1
4,032,885 - BNILDI_20085 0.62 +3.7
4,032,982 + BNILDI_20085 0.70 -0.2
4,032,982 + BNILDI_20085 0.70 -0.5
4,032,982 + BNILDI_20085 0.70 -1.6
4,032,982 + BNILDI_20085 0.70 -0.4
4,032,982 + BNILDI_20085 0.70 +0.9
4,032,983 - BNILDI_20085 0.70 +1.2
4,032,983 - BNILDI_20085 0.70 -0.5
4,032,983 - BNILDI_20085 0.70 +0.4
4,032,983 - BNILDI_20085 0.70 -1.5
4,032,983 - BNILDI_20085 0.70 +0.1
4,032,983 - BNILDI_20085 0.70 +1.4
4,032,983 - BNILDI_20085 0.70 -0.8
4,032,983 - BNILDI_20085 0.70 +3.8
4,032,983 - BNILDI_20085 0.70 +1.5
4,032,987 - BNILDI_20085 0.71 -4.2
4,032,987 - BNILDI_20085 0.71 -2.4
4,033,061 + BNILDI_20085 0.77 -0.8
4,033,071 + BNILDI_20085 0.78 -3.6
4,033,071 + BNILDI_20085 0.78 -1.9
4,033,071 + BNILDI_20085 0.78 +0.0
4,033,073 + BNILDI_20085 0.78 +0.4
4,033,074 - BNILDI_20085 0.78 +0.3
4,033,074 - BNILDI_20085 0.78 -0.3
4,033,074 - BNILDI_20085 0.78 -2.4

Or see this region's nucleotide sequence