Strain Fitness in Escherichia coli ECRC62 around BNILDI_18975

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntminD and minE are separated by 3 nucleotidesminE and BNILDI_18975 are separated by 371 nucleotidesBNILDI_18975 and ymgG are separated by 653 nucleotidesymgG and ymgD are separated by 9 nucleotides BNILDI_18965: minD - septum site-determining protein MinD, at 3,813,897 to 3,814,709 minD BNILDI_18970: minE - cell division topological specificity factor MinE, at 3,814,713 to 3,814,979 minE BNILDI_18975: BNILDI_18975 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,815,351 to 3,815,677 _18975 BNILDI_18980: ymgG - UPF0757 protein YmgG, at 3,816,331 to 3,816,615 ymgG BNILDI_18985: ymgD - Uncharacterized protein YmgD, at 3,816,625 to 3,816,954 ymgD Position (kb) 3815 3816Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3814.847 kb on + strand, within minEat 3815.001 kb on - strandat 3815.072 kb on + strandat 3815.122 kb on + strandat 3815.154 kb on + strandat 3815.155 kb on - strandat 3815.522 kb on - strand, within BNILDI_18975at 3815.643 kb on + strand, within BNILDI_18975at 3815.687 kb on + strandat 3815.697 kb on + strandat 3815.713 kb on + strandat 3815.714 kb on - strandat 3815.714 kb on - strandat 3815.714 kb on - strandat 3815.783 kb on + strandat 3815.783 kb on + strandat 3815.875 kb on + strandat 3815.876 kb on - strandat 3815.905 kb on - strandat 3816.177 kb on + strandat 3816.234 kb on - strandat 3816.268 kb on - strandat 3816.300 kb on + strandat 3816.414 kb on - strand, within ymgG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
3,814,847 + minE BNILDI_18970 0.50 -1.3
3,815,001 - -1.4
3,815,072 + +0.7
3,815,122 + +0.1
3,815,154 + -0.5
3,815,155 - +0.1
3,815,522 - BNILDI_18975 0.52 +0.3
3,815,643 + BNILDI_18975 0.89 +1.2
3,815,687 + +0.2
3,815,697 + -0.2
3,815,713 + -2.9
3,815,714 - -0.5
3,815,714 - +1.5
3,815,714 - +0.3
3,815,783 + +1.1
3,815,783 + +1.0
3,815,875 + -0.1
3,815,876 - -1.5
3,815,905 - +0.1
3,816,177 + +1.5
3,816,234 - +1.0
3,816,268 - +0.5
3,816,300 + +2.6
3,816,414 - ymgG BNILDI_18980 0.29 +0.4

Or see this region's nucleotide sequence