Strain Fitness in Escherichia coli ECRC62 around BNILDI_16600

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,323,430	+	ldtE	BNILDI_16590	0.62	+0.9
3,323,430	+	ldtE	BNILDI_16590	0.62	-2.0
3,323,430	+	ldtE	BNILDI_16590	0.62	+0.5
3,323,431	-	ldtE	BNILDI_16590	0.62	+1.4
3,323,431	-	ldtE	BNILDI_16590	0.62	-0.3
3,323,455	-	ldtE	BNILDI_16590	0.65	+0.8
3,323,545	+	ldtE	BNILDI_16590	0.74	-0.3
3,323,545	+	ldtE	BNILDI_16590	0.74	+0.1
3,323,635	-	ldtE	BNILDI_16590	0.83	-0.4
3,323,644	-	ldtE	BNILDI_16590	0.84	-0.6
3,323,680	+	ldtE	BNILDI_16590	0.87	-2.9
3,323,680	+	ldtE	BNILDI_16590	0.87	+0.5
3,323,681	-	ldtE	BNILDI_16590	0.87	-1.6
3,323,787	+				+1.0
3,323,787	+				-0.5
3,323,874	-				-0.0
3,323,874	-				+0.2
3,323,874	-				+0.1
3,323,874	-				+1.1
3,323,883	-				-0.1
3,323,887	-				+1.3
3,324,064	-	lpp	BNILDI_16595	0.81	+0.4
3,324,064	-	lpp	BNILDI_16595	0.81	+1.1
3,324,144	-				-0.3
3,324,149	+				-0.0
3,324,206	+				+0.9
3,324,207	-				+0.1
3,324,312	+				-0.4
3,324,313	-				+0.2
3,324,314	+				+0.6
3,324,417	+				-3.5
3,324,420	+				+2.3
3,324,664	-	pykF	BNILDI_16600	0.17	+0.1
3,324,668	-	pykF	BNILDI_16600	0.18	+1.8
3,324,671	+	pykF	BNILDI_16600	0.18	+0.3
3,324,878	-	pykF	BNILDI_16600	0.32	+0.9
3,325,030	+	pykF	BNILDI_16600	0.43	+1.3
3,325,064	-	pykF	BNILDI_16600	0.46	-0.4
3,325,406	-	pykF	BNILDI_16600	0.70	-1.7
3,325,504	-	pykF	BNILDI_16600	0.77	+0.3
3,325,544	-	pykF	BNILDI_16600	0.80	+0.5
3,325,769	-				+1.1
3,325,841	-				+0.2
3,325,941	-				+0.3
3,326,235	+				-0.1
3,326,258	+				+0.4
3,326,259	-				-1.7
3,326,262	+				+0.8
3,326,262	+				-0.2
3,326,262	+				-1.2
3,326,263	-				+1.1
3,326,263	-				+0.9
3,326,350	+				+0.5
3,326,350	+				+0.6
3,326,350	+				+0.3
3,326,350	+				+0.3
3,326,351	-				+0.2
3,326,352	+				-0.1
3,326,372	+				+0.3
3,326,382	+				-0.6
3,326,489	+	fumD	BNILDI_16605	0.48	+0.4
3,326,490	-	fumD	BNILDI_16605	0.49	+0.0
3,326,509	+	fumD	BNILDI_16605	0.58	-1.3
3,326,510	-	fumD	BNILDI_16605	0.58	+1.2
3,326,513	+	fumD	BNILDI_16605	0.60	+0.3