Strain Fitness in Escherichia coli ECRC62 around BNILDI_16290

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,264,722	+	celF	BNILDI_16280	0.89	+0.1
3,264,733	+	celF	BNILDI_16280	0.90	-2.0
3,265,073	+	chbG	BNILDI_16285	0.25	+0.5
3,265,074	-	chbG	BNILDI_16285	0.25	-0.2
3,265,074	-	chbG	BNILDI_16285	0.25	-1.2
3,265,097	+	chbG	BNILDI_16285	0.28	-0.9
3,265,223	-	chbG	BNILDI_16285	0.45	-1.7
3,265,268	+	chbG	BNILDI_16285	0.51	-1.1
3,265,268	+	chbG	BNILDI_16285	0.51	-0.0
3,265,269	-	chbG	BNILDI_16285	0.51	-2.9
3,265,269	-	chbG	BNILDI_16285	0.51	-0.6
3,265,348	+	chbG	BNILDI_16285	0.61	+1.4
3,265,352	+	chbG	BNILDI_16285	0.62	-1.7
3,265,353	-	chbG	BNILDI_16285	0.62	-0.5
3,265,517	+	chbG	BNILDI_16285	0.84	+0.0
3,265,517	+	chbG	BNILDI_16285	0.84	+0.2
3,265,517	+	chbG	BNILDI_16285	0.84	-3.2
3,265,517	+	chbG	BNILDI_16285	0.84	-0.1
3,265,517	+	chbG	BNILDI_16285	0.84	+0.3
3,265,517	+	chbG	BNILDI_16285	0.84	+1.1
3,265,518	-	chbG	BNILDI_16285	0.84	+0.3
3,265,518	-	chbG	BNILDI_16285	0.84	+0.3
3,265,631	+				+0.0
3,265,632	-				-0.2
3,265,638	+				+1.4
3,265,642	+				-0.7
3,265,643	-				-1.5
3,265,710	+				+0.6
3,265,765	-				+0.2
3,265,765	-				+0.0
3,265,770	+				-1.7
3,265,872	+				+0.3
3,265,883	+				+2.8
3,265,883	+				+1.1
3,265,884	-				-0.6
3,265,898	+				+0.9
3,265,902	-				+0.6
3,266,001	+	katE	BNILDI_16290	0.14	+0.6
3,266,002	-	katE	BNILDI_16290	0.14	+2.7
3,266,002	-	katE	BNILDI_16290	0.14	-1.2
3,266,002	-	katE	BNILDI_16290	0.14	+1.9
3,266,014	-	katE	BNILDI_16290	0.14	+0.6
3,266,185	+	katE	BNILDI_16290	0.22	-2.2
3,266,232	+	katE	BNILDI_16290	0.24	-0.4
3,266,233	-	katE	BNILDI_16290	0.24	-2.1
3,266,301	+	katE	BNILDI_16290	0.27	-0.7
3,266,301	+	katE	BNILDI_16290	0.27	+0.1
3,266,302	-	katE	BNILDI_16290	0.27	+1.1
3,266,336	+	katE	BNILDI_16290	0.29	+0.6
3,266,472	+	katE	BNILDI_16290	0.35	+0.3
3,266,496	-	katE	BNILDI_16290	0.36	-0.8
3,266,496	-	katE	BNILDI_16290	0.36	-0.7
3,266,547	+	katE	BNILDI_16290	0.38	-0.9
3,266,548	-	katE	BNILDI_16290	0.38	+0.1
3,266,763	+	katE	BNILDI_16290	0.48	-2.6
3,267,055	-	katE	BNILDI_16290	0.60	+1.9
3,267,224	+	katE	BNILDI_16290	0.68	+1.7
3,267,224	+	katE	BNILDI_16290	0.68	-0.6
3,267,286	+	katE	BNILDI_16290	0.71	+2.9
3,267,379	-	katE	BNILDI_16290	0.75	-0.6
3,267,456	+	katE	BNILDI_16290	0.78	-0.1
3,267,464	-	katE	BNILDI_16290	0.79	+1.0
3,267,464	-	katE	BNILDI_16290	0.79	+0.4
3,267,573	+	katE	BNILDI_16290	0.83	-1.3
3,267,573	+	katE	BNILDI_16290	0.83	+0.4
3,267,737	-				-0.1
3,267,771	+				-0.3
3,268,008	-				-2.3
3,268,012	-				+1.0
3,268,014	-				+0.3
3,268,045	-				+1.5
3,268,110	-				+1.1
3,268,151	-				+0.3
3,268,187	+	cedA	BNILDI_16295	0.14	-0.6
3,268,191	-	cedA	BNILDI_16295	0.16	+0.3
3,268,191	-	cedA	BNILDI_16295	0.16	+0.8
3,268,191	-	cedA	BNILDI_16295	0.16	+0.9
3,268,195	-	cedA	BNILDI_16295	0.18	-0.1
3,268,195	-	cedA	BNILDI_16295	0.18	+0.4
3,268,291	+	cedA	BNILDI_16295	0.57	-0.2
3,268,329	-	cedA	BNILDI_16295	0.73	-0.3
3,268,399	+				+0.1
3,268,400	-				+0.3
3,268,426	+				+1.2
3,268,502	+				+1.3
3,268,511	-				-0.5
3,268,665	-				-2.7
3,268,799	-	ydjO	BNILDI_16300	0.35	-0.4
3,268,861	-	ydjO	BNILDI_16300	0.51	+0.6
3,268,940	+	ydjO	BNILDI_16300	0.73	+1.8