Strain Fitness in Escherichia coli ECRC62 around BNILDI_15730

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,156,113	-	copD	BNILDI_15710	0.76	-0.4
3,156,156	+	copD	BNILDI_15710	0.81	+1.1
3,156,157	-	copD	BNILDI_15710	0.81	+0.4
3,156,184	+	copD	BNILDI_15710	0.84	+1.6
3,156,185	-	copD	BNILDI_15710	0.84	-0.5
3,156,496	+	copD	BNILDI_15715	0.47	+0.5
3,156,496	+	copD	BNILDI_15715	0.47	-0.0
3,156,496	+	copD	BNILDI_15715	0.47	-0.4
3,156,496	+	copD	BNILDI_15715	0.47	+0.5
3,156,496	+	copD	BNILDI_15715	0.47	+1.0
3,156,496	+	copD	BNILDI_15715	0.47	-2.4
3,156,497	-	copD	BNILDI_15715	0.48	-2.4
3,156,513	+	copD	BNILDI_15715	0.52	+1.0
3,156,574	-	copD	BNILDI_15715	0.70	-1.2
3,156,823	-				-0.2
3,156,844	+				-0.3
3,156,845	-				+1.0
3,156,845	-				+0.3
3,157,144	+	pphA	BNILDI_15730	0.11	-3.4
3,157,145	-	pphA	BNILDI_15730	0.11	-3.0
3,157,214	+	pphA	BNILDI_15730	0.22	+0.4
3,157,255	+	pphA	BNILDI_15730	0.28	-0.3
3,157,255	+	pphA	BNILDI_15730	0.28	+0.6
3,157,451	+	pphA	BNILDI_15730	0.58	+0.4
3,157,451	+	pphA	BNILDI_15730	0.58	-0.1
3,157,518	+	pphA	BNILDI_15730	0.68	+0.8
3,157,518	+	pphA	BNILDI_15730	0.68	-1.6
3,157,602	-	pphA	BNILDI_15730	0.81	+1.6
3,157,673	+				+1.6
3,157,674	-				+0.3
3,157,742	-				-0.6
3,157,771	-	yebW	BNILDI_15735	0.16	-0.2
3,157,771	-	yebW	BNILDI_15735	0.16	+1.3
3,157,772	+	yebW	BNILDI_15735	0.16	+1.3
3,157,824	-	yebW	BNILDI_15735	0.35	+0.5
3,157,891	+	yebW	BNILDI_15735	0.59	-0.5
3,158,100	-	yebV	BNILDI_15740	0.32	-0.8
3,158,147	-	yebV	BNILDI_15740	0.52	-1.7
3,158,147	-	yebV	BNILDI_15740	0.52	-0.4
3,158,150	+	yebV	BNILDI_15740	0.53	-0.8
3,158,168	-	yebV	BNILDI_15740	0.61	-3.3
3,158,278	-				+0.1
3,158,611	+	rsmF	BNILDI_15745	0.16	+0.5