Strain Fitness in Escherichia coli ECRC62 around BNILDI_15505

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_15490 and BNILDI_15495 overlap by 1 nucleotidesBNILDI_15495 and ruvC overlap by 1 nucleotidesruvC and BNILDI_15505 are separated by 1 nucleotidesBNILDI_15505 and yobI are separated by 70 nucleotidesyobI and ruvA are separated by 138 nucleotidesruvA and ruvB are separated by 8 nucleotides BNILDI_15490: BNILDI_15490 - putative transcriptional regulatory protein YebC, at 3,113,714 to 3,114,454 _15490 BNILDI_15495: BNILDI_15495 - Crossover junction endodeoxyribonuclease RuvC, at 3,114,454 to 3,114,489 _15495 BNILDI_15500: ruvC - crossover junction endodeoxyribonuclease RuvC, at 3,114,489 to 3,115,010 ruvC BNILDI_15505: BNILDI_15505 - YebB family permuted papain-like enzyme, at 3,115,012 to 3,115,614 _15505 BNILDI_15510: yobI - Uncharacterized protein YobI, at 3,115,685 to 3,115,750 yobI BNILDI_15515: ruvA - Holliday junction branch migration protein RuvA, at 3,115,889 to 3,116,500 ruvA BNILDI_15520: ruvB - Holliday junction branch migration DNA helicase RuvB, at 3,116,509 to 3,117,519 ruvB Position (kb) 3115 3116Strain fitness (log2 ratio) -2 -1 0 1 2at 3114.102 kb on + strand, within BNILDI_15490at 3114.107 kb on + strand, within BNILDI_15490at 3114.207 kb on - strand, within BNILDI_15490at 3114.253 kb on + strand, within BNILDI_15490at 3114.823 kb on + strand, within ruvCat 3114.823 kb on + strand, within ruvCat 3115.009 kb on - strandat 3115.136 kb on - strand, within BNILDI_15505at 3115.287 kb on + strand, within BNILDI_15505at 3115.414 kb on - strand, within BNILDI_15505at 3115.483 kb on - strand, within BNILDI_15505at 3115.560 kb on + strandat 3115.560 kb on + strandat 3115.560 kb on + strandat 3115.606 kb on - strandat 3115.859 kb on + strandat 3115.859 kb on + strandat 3115.941 kb on + strandat 3116.077 kb on + strand, within ruvAat 3116.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,114,102 + BNILDI_15490 0.52 -1.0
3,114,107 + BNILDI_15490 0.53 +1.2
3,114,207 - BNILDI_15490 0.67 -0.9
3,114,253 + BNILDI_15490 0.73 +0.7
3,114,823 + ruvC BNILDI_15500 0.64 -2.0
3,114,823 + ruvC BNILDI_15500 0.64 -1.8
3,115,009 - -1.9
3,115,136 - BNILDI_15505 0.21 -1.5
3,115,287 + BNILDI_15505 0.46 -2.3
3,115,414 - BNILDI_15505 0.67 -2.2
3,115,483 - BNILDI_15505 0.78 -1.1
3,115,560 + -0.2
3,115,560 + +2.7
3,115,560 + +1.5
3,115,606 - -0.7
3,115,859 + -1.5
3,115,859 + -1.8
3,115,941 + +0.1
3,116,077 + ruvA BNILDI_15515 0.31 +0.0
3,116,561 + +1.5

Or see this region's nucleotide sequence