Strain Fitness in Escherichia coli ECRC62 around BNILDI_15415

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflhe and yecT are separated by 119 nucleotidesyecT and yecV are separated by 90 nucleotidesyecV and argS are separated by 41 nucleotides BNILDI_15405: flhe - flagellar protein FlhE, at 3,098,893 to 3,099,285 flhe BNILDI_15410: yecT - Uncharacterized protein YecT, at 3,099,405 to 3,099,893 yecT BNILDI_15415: yecV - Protein YecV, at 3,099,984 to 3,100,028 yecV BNILDI_15420: argS - arginine--tRNA ligase, at 3,100,070 to 3,101,803 argS Position (kb) 3099 3100 3101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3099.252 kb on - strandat 3099.314 kb on - strandat 3099.319 kb on + strandat 3099.371 kb on + strandat 3099.487 kb on - strand, within yecTat 3099.495 kb on - strand, within yecTat 3099.825 kb on + strand, within yecTat 3099.826 kb on - strand, within yecTat 3099.826 kb on - strand, within yecTat 3099.874 kb on - strandat 3100.001 kb on - strand, within yecVat 3100.007 kb on - strand, within yecVat 3100.035 kb on - strandat 3100.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,099,252 - +0.6
3,099,314 - -0.3
3,099,319 + +0.2
3,099,371 + +1.1
3,099,487 - yecT BNILDI_15410 0.17 +0.5
3,099,495 - yecT BNILDI_15410 0.18 +1.2
3,099,825 + yecT BNILDI_15410 0.86 +0.0
3,099,826 - yecT BNILDI_15410 0.86 -1.4
3,099,826 - yecT BNILDI_15410 0.86 -0.2
3,099,874 - +0.5
3,100,001 - yecV BNILDI_15415 0.38 -1.7
3,100,007 - yecV BNILDI_15415 0.51 -3.8
3,100,035 - -1.2
3,100,072 - +1.1

Or see this region's nucleotide sequence