Strain Fitness in Escherichia coli ECRC62 around BNILDI_14915

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeO and Asn_trna are separated by 100 nucleotidesAsn_trna and ycdB are separated by 453 nucleotidesycdB and amn are separated by 342 nucleotides BNILDI_14905: yeeO - toxic metabolite efflux MATE transporter YeeO, at 3,005,044 to 3,006,498 yeeO BNILDI_14910: Asn_trna - tRNA-Asn(gtt), at 3,006,599 to 3,006,674 _trna BNILDI_14915: ycdB - putative transcriptional regulatory protein YcdB, at 3,007,128 to 3,007,844 ycdB BNILDI_14920: amn - AMP nucleosidase, at 3,008,187 to 3,009,641 amn Position (kb) 3007 3008Strain fitness (log2 ratio) -2 -1 0 1 2at 3006.246 kb on + strand, within yeeOat 3006.247 kb on - strand, within yeeOat 3006.314 kb on + strand, within yeeOat 3006.315 kb on - strand, within yeeOat 3006.322 kb on + strand, within yeeOat 3006.579 kb on - strandat 3006.879 kb on - strandat 3006.883 kb on + strandat 3006.920 kb on - strandat 3007.077 kb on + strandat 3007.337 kb on + strand, within ycdBat 3007.458 kb on - strand, within ycdBat 3007.530 kb on - strand, within ycdBat 3008.186 kb on - strandat 3008.373 kb on + strand, within amnat 3008.528 kb on + strand, within amnat 3008.532 kb on + strand, within amnat 3008.667 kb on + strand, within amnat 3008.671 kb on + strand, within amnat 3008.826 kb on - strand, within amn

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,006,246 + yeeO BNILDI_14905 0.83 +0.1
3,006,247 - yeeO BNILDI_14905 0.83 -0.3
3,006,314 + yeeO BNILDI_14905 0.87 +0.7
3,006,315 - yeeO BNILDI_14905 0.87 +1.4
3,006,322 + yeeO BNILDI_14905 0.88 -2.2
3,006,579 - -1.3
3,006,879 - +1.6
3,006,883 + -0.5
3,006,920 - +2.4
3,007,077 + -0.7
3,007,337 + ycdB BNILDI_14915 0.29 +0.8
3,007,458 - ycdB BNILDI_14915 0.46 +0.5
3,007,530 - ycdB BNILDI_14915 0.56 -1.6
3,008,186 - +0.2
3,008,373 + amn BNILDI_14920 0.13 -0.1
3,008,528 + amn BNILDI_14920 0.23 -0.3
3,008,532 + amn BNILDI_14920 0.24 +1.7
3,008,667 + amn BNILDI_14920 0.33 -1.6
3,008,671 + amn BNILDI_14920 0.33 +0.6
3,008,826 - amn BNILDI_14920 0.44 -0.6

Or see this region's nucleotide sequence