Strain Fitness in Escherichia coli ECRC62 around BNILDI_11515

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_11505 and BNILDI_11510 are separated by 121 nucleotidesBNILDI_11510 and BNILDI_11515 are separated by 32 nucleotidesBNILDI_11515 and BNILDI_11520 are separated by 174 nucleotidesBNILDI_11520 and BNILDI_11525 are separated by 22 nucleotidesBNILDI_11525 and BNILDI_11530 are separated by 67 nucleotides BNILDI_11505: BNILDI_11505 - phage repressor protein, at 2,316,872 to 2,317,504 _11505 BNILDI_11510: BNILDI_11510 - Rha family transcriptional regulator, at 2,317,626 to 2,317,868 _11510 BNILDI_11515: BNILDI_11515 - Protein ORFb in retron Ec67, at 2,317,901 to 2,318,410 _11515 BNILDI_11520: BNILDI_11520 - hypothetical protein, at 2,318,585 to 2,318,809 _11520 BNILDI_11525: BNILDI_11525 - Protein ORFc in retron Ec67, at 2,318,832 to 2,319,173 _11525 BNILDI_11530: BNILDI_11530 - DUF2732 domain-containing protein, at 2,319,241 to 2,319,474 _11530 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -3 -2 -1 0 1at 2317.594 kb on + strandat 2317.617 kb on + strandat 2317.626 kb on - strandat 2317.631 kb on + strandat 2317.638 kb on - strandat 2317.638 kb on - strandat 2317.804 kb on - strand, within BNILDI_11510at 2317.962 kb on + strand, within BNILDI_11515at 2318.106 kb on + strand, within BNILDI_11515at 2318.107 kb on - strand, within BNILDI_11515at 2318.107 kb on - strand, within BNILDI_11515at 2318.183 kb on + strand, within BNILDI_11515at 2318.245 kb on - strand, within BNILDI_11515at 2318.272 kb on + strand, within BNILDI_11515at 2318.284 kb on + strand, within BNILDI_11515at 2318.284 kb on + strand, within BNILDI_11515at 2318.285 kb on - strand, within BNILDI_11515at 2318.285 kb on - strand, within BNILDI_11515at 2318.418 kb on - strandat 2318.455 kb on + strandat 2318.478 kb on + strandat 2318.825 kb on - strandat 2318.841 kb on - strandat 2319.298 kb on - strand, within BNILDI_11530

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,317,594 + +0.3
2,317,617 + +0.5
2,317,626 - -0.4
2,317,631 + -0.3
2,317,638 - +0.7
2,317,638 - -0.6
2,317,804 - BNILDI_11510 0.73 -3.5
2,317,962 + BNILDI_11515 0.12 -0.6
2,318,106 + BNILDI_11515 0.40 +0.5
2,318,107 - BNILDI_11515 0.40 -0.9
2,318,107 - BNILDI_11515 0.40 +1.7
2,318,183 + BNILDI_11515 0.55 +1.1
2,318,245 - BNILDI_11515 0.67 +0.4
2,318,272 + BNILDI_11515 0.73 -0.5
2,318,284 + BNILDI_11515 0.75 -1.9
2,318,284 + BNILDI_11515 0.75 +1.0
2,318,285 - BNILDI_11515 0.75 +0.1
2,318,285 - BNILDI_11515 0.75 +0.1
2,318,418 - +0.5
2,318,455 + +0.4
2,318,478 + +1.3
2,318,825 - +0.6
2,318,841 - +1.7
2,319,298 - BNILDI_11530 0.24 +0.0

Or see this region's nucleotide sequence