Strain Fitness in Escherichia coli ECRC62 around BNILDI_11190

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,256,082	-	emrA	BNILDI_11180	0.84	+0.1
2,256,107	+	emrA	BNILDI_11180	0.86	+0.1
2,256,108	-	emrA	BNILDI_11180	0.86	-4.2
2,256,108	-	emrA	BNILDI_11180	0.86	-1.5
2,256,152	+	emrA	BNILDI_11180	0.90	+0.2
2,256,153	-	emrA	BNILDI_11180	0.90	-0.4
2,256,175	-				+0.0
2,256,181	-				-0.4
2,256,273	+				+1.8
2,256,273	+				-0.7
2,256,273	+				-2.4
2,256,274	-				-0.6
2,256,294	+				-0.2
2,256,369	-				+0.8
2,256,370	+				+0.7
2,256,370	+				+1.3
2,256,371	-				-0.5
2,256,371	-				+0.6
2,256,532	-	emrR	BNILDI_11185	0.25	-0.1
2,256,701	-	emrR	BNILDI_11185	0.57	-0.0
2,256,718	-	emrR	BNILDI_11185	0.60	-0.0
2,256,925	-				-0.7
2,256,992	+				-0.1
2,256,992	+				-0.8
2,256,993	-				-0.0
2,257,023	-				+0.4
2,257,023	-				-1.0
2,257,024	+				-0.1
2,257,024	+				-1.8
2,257,025	-				+0.2
2,257,025	-				+1.4
2,257,027	-				+0.6
2,257,027	-				-0.3
2,257,027	-				+1.4
2,257,027	-				-2.7
2,257,068	+	ygaH	BNILDI_11190	0.14	+1.7
2,257,069	-	ygaH	BNILDI_11190	0.14	-0.2
2,257,086	+	ygaH	BNILDI_11190	0.19	-0.8
2,257,086	+	ygaH	BNILDI_11190	0.19	+1.3
2,257,103	+	ygaH	BNILDI_11190	0.24	-0.1
2,257,169	-	ygaH	BNILDI_11190	0.44	+0.3
2,257,169	-	ygaH	BNILDI_11190	0.44	+0.4
2,257,307	+	ygaH	BNILDI_11190	0.85	-0.3
2,257,327	+				-3.3
2,257,339	+				+0.5
2,257,349	+				-0.5
2,257,349	+				-2.8
2,257,469	+	ygaZ	BNILDI_11195	0.17	+0.1
2,257,469	+	ygaZ	BNILDI_11195	0.17	+0.4
2,257,529	-	ygaZ	BNILDI_11195	0.25	+0.5
2,257,546	+	ygaZ	BNILDI_11195	0.27	+0.9
2,257,554	-	ygaZ	BNILDI_11195	0.28	+0.1
2,257,781	-	ygaZ	BNILDI_11195	0.59	-1.6
2,257,790	-	ygaZ	BNILDI_11195	0.60	-0.9
2,257,861	+	ygaZ	BNILDI_11195	0.70	-0.8
2,257,911	+	ygaZ	BNILDI_11195	0.77	+1.8
2,257,911	+	ygaZ	BNILDI_11195	0.77	-1.7
2,257,912	-	ygaZ	BNILDI_11195	0.77	-0.0
2,257,996	+	ygaZ	BNILDI_11195	0.88	-2.3
2,257,999	-	ygaZ	BNILDI_11195	0.88	-2.2
2,258,002	+	ygaZ	BNILDI_11195	0.89	-1.5
2,258,003	-	ygaZ	BNILDI_11195	0.89	+0.9
2,258,003	-	ygaZ	BNILDI_11195	0.89	-0.3
2,258,005	+	ygaZ	BNILDI_11195	0.89	+0.4
2,258,091	-				+0.3
2,258,112	+				-0.0
2,258,118	+				+0.4
2,258,173	+				+1.4
2,258,173	+				-1.4
2,258,173	+				-0.7
2,258,173	+				-0.5
2,258,174	-				-3.8
2,258,353	+	ygaY	BNILDI_11200	0.12	+1.7