Strain Fitness in Escherichia coli ECRC62 around BNILDI_06465

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,290,637	+	nrfA	BNILDI_06455	0.82	-3.0
1,290,638	-	nrfA	BNILDI_06455	0.82	+1.0
1,290,877	+				+2.3
1,290,878	-				-2.1
1,290,945	+				-2.7
1,290,945	+				-1.0
1,290,946	-				+0.1
1,290,946	-				-0.6
1,290,953	+				+0.3
1,290,953	+				+0.3
1,290,954	-				+0.4
1,290,969	-				-3.2
1,290,969	-				+0.2
1,291,105	-	nrfB	BNILDI_06460	0.28	+0.8
1,291,122	+	nrfB	BNILDI_06460	0.31	+0.0
1,291,122	+	nrfB	BNILDI_06460	0.31	+1.0
1,291,122	+	nrfB	BNILDI_06460	0.31	-0.2
1,291,123	-	nrfB	BNILDI_06460	0.31	-0.9
1,291,123	-	nrfB	BNILDI_06460	0.31	-1.2
1,291,123	-	nrfB	BNILDI_06460	0.31	-0.7
1,291,123	-	nrfB	BNILDI_06460	0.31	-3.9
1,291,123	-	nrfB	BNILDI_06460	0.31	+0.4
1,291,123	-	nrfB	BNILDI_06460	0.31	-0.2
1,291,158	+	nrfB	BNILDI_06460	0.37	-2.9
1,291,255	+	nrfB	BNILDI_06460	0.54	-1.3
1,291,255	+	nrfB	BNILDI_06460	0.54	-0.2
1,291,256	-	nrfB	BNILDI_06460	0.55	-0.2
1,291,284	+	nrfB	BNILDI_06460	0.60	-1.7
1,291,285	-	nrfB	BNILDI_06460	0.60	+1.0
1,291,407	-	nrfB	BNILDI_06460	0.81	+1.3
1,291,665	-	nrfC	BNILDI_06465	0.23	+0.6
1,291,761	+	nrfC	BNILDI_06465	0.38	+0.9
1,291,775	+	nrfC	BNILDI_06465	0.40	+0.1
1,291,869	-	nrfC	BNILDI_06465	0.54	-3.0
1,292,099	+	nrfC	BNILDI_06465	0.88	-0.6
1,292,099	+	nrfC	BNILDI_06465	0.88	+1.0
1,292,099	+	nrfC	BNILDI_06465	0.88	+0.4
1,292,100	-	nrfC	BNILDI_06465	0.88	-0.0
1,292,100	-	nrfC	BNILDI_06465	0.88	-0.5
1,292,156	+				-1.0
1,292,438	+	nrfD	BNILDI_06470	0.27	+0.7
1,292,486	+	nrfD	BNILDI_06470	0.32	-1.5
1,292,487	-	nrfD	BNILDI_06470	0.32	-1.1
1,292,661	-	nrfD	BNILDI_06470	0.51	+0.4
1,292,661	-	nrfD	BNILDI_06470	0.51	+0.2
1,292,661	-	nrfD	BNILDI_06470	0.51	+0.5
1,292,937	+	nrfD	BNILDI_06470	0.79	+1.3
1,292,937	+	nrfD	BNILDI_06470	0.79	-1.0
1,292,937	+	nrfD	BNILDI_06470	0.79	+0.4
1,292,937	+	nrfD	BNILDI_06470	0.79	-0.9
1,292,938	-	nrfD	BNILDI_06470	0.80	+0.2
1,293,131	+				-1.9
1,293,160	+				-0.7
1,293,160	+				+0.2
1,293,161	-				+0.1
1,293,161	-				+0.5