Strain Fitness in Escherichia coli ECRC62 around BNILDI_04555

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglmU and atpC are separated by 350 nucleotidesatpC and atpD are separated by 20 nucleotides BNILDI_04545: glmU - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 900,810 to 902,180 glmU BNILDI_04555: atpC - F0F1 ATP synthase subunit epsilon, at 902,531 to 902,950 atpC BNILDI_04560: atpD - F0F1 ATP synthase subunit beta, at 902,971 to 904,353 atpD Position (kb) 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1at 902.196 kb on - strandat 902.432 kb on + strandat 902.447 kb on + strandat 902.448 kb on - strandat 902.608 kb on - strand, within atpCat 902.608 kb on - strand, within atpCat 902.613 kb on - strand, within atpC

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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902,196 - -0.4
902,432 + -2.2
902,447 + -2.8
902,448 - +0.5
902,608 - atpC BNILDI_04555 0.18 -1.1
902,608 - atpC BNILDI_04555 0.18 -1.1
902,613 - atpC BNILDI_04555 0.20 -1.1

Or see this region's nucleotide sequence