Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_04520 and fimD are separated by 10 nucleotides fimD and lfpB are separated by 24 nucleotides lfpB and lpfA-O113 are separated by 47 nucleotides
BNILDI_04520: BNILDI_04520 - fimbrial protein, at 893,535 to 894,608
_04520
BNILDI_04525: fimD - fimbrial protein, at 894,619 to 897,141
fimD
BNILDI_04530: lfpB - fimbrial chaperone, at 897,166 to 897,897
lfpB
BNILDI_04535: lpfA-O113 - long polar fimbria major subunit LpfA-O113, at 897,945 to 898,517
lpfA-O113
Position (kb) 894
895
896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 893.631 kb on + strand at 893.632 kb on - strand at 893.653 kb on + strand, within BNILDI_04520 at 893.653 kb on + strand, within BNILDI_04520 at 893.654 kb on - strand, within BNILDI_04520 at 893.757 kb on + strand, within BNILDI_04520 at 893.804 kb on + strand, within BNILDI_04520 at 893.805 kb on - strand, within BNILDI_04520 at 893.805 kb on - strand, within BNILDI_04520 at 894.252 kb on + strand, within BNILDI_04520 at 894.252 kb on + strand, within BNILDI_04520 at 894.254 kb on + strand, within BNILDI_04520 at 894.348 kb on - strand, within BNILDI_04520 at 894.533 kb on + strand at 894.534 kb on - strand at 894.550 kb on - strand at 894.554 kb on + strand at 894.598 kb on + strand at 894.620 kb on + strand at 894.621 kb on - strand at 894.726 kb on + strand at 894.727 kb on - strand at 894.758 kb on + strand at 894.856 kb on + strand at 894.856 kb on + strand at 894.946 kb on - strand, within fimD at 894.949 kb on - strand, within fimD at 894.959 kb on - strand, within fimD at 894.977 kb on + strand, within fimD at 894.978 kb on - strand, within fimD at 894.978 kb on - strand, within fimD at 895.069 kb on - strand, within fimD at 895.071 kb on + strand, within fimD at 895.076 kb on - strand, within fimD at 895.076 kb on - strand, within fimD at 895.116 kb on + strand, within fimD at 895.117 kb on - strand, within fimD at 895.117 kb on - strand, within fimD at 895.117 kb on - strand, within fimD at 895.126 kb on + strand, within fimD at 895.127 kb on - strand, within fimD at 895.138 kb on + strand, within fimD at 895.139 kb on - strand, within fimD at 895.139 kb on - strand, within fimD at 895.185 kb on - strand, within fimD at 895.211 kb on + strand, within fimD at 895.211 kb on + strand, within fimD at 895.212 kb on - strand, within fimD at 895.218 kb on - strand, within fimD at 895.238 kb on + strand, within fimD at 895.250 kb on + strand, within fimD at 895.250 kb on + strand, within fimD at 895.251 kb on - strand, within fimD at 895.263 kb on + strand, within fimD at 895.263 kb on + strand, within fimD at 895.263 kb on + strand, within fimD at 895.264 kb on - strand, within fimD at 895.264 kb on - strand, within fimD at 895.264 kb on - strand, within fimD at 895.295 kb on + strand, within fimD at 895.296 kb on - strand, within fimD at 895.296 kb on - strand, within fimD at 895.296 kb on - strand, within fimD at 895.307 kb on - strand, within fimD at 895.397 kb on + strand, within fimD at 895.397 kb on + strand, within fimD at 895.398 kb on - strand, within fimD at 895.398 kb on - strand, within fimD at 895.410 kb on + strand, within fimD at 895.410 kb on + strand, within fimD at 895.411 kb on - strand, within fimD at 895.441 kb on + strand, within fimD at 895.454 kb on + strand, within fimD at 895.455 kb on - strand, within fimD at 895.520 kb on + strand, within fimD at 895.521 kb on - strand, within fimD at 895.599 kb on + strand, within fimD at 895.599 kb on + strand, within fimD at 895.633 kb on + strand, within fimD at 895.633 kb on + strand, within fimD at 895.634 kb on - strand, within fimD at 895.753 kb on - strand, within fimD at 895.754 kb on + strand, within fimD at 895.754 kb on + strand, within fimD at 895.754 kb on + strand, within fimD at 895.754 kb on + strand, within fimD at 895.755 kb on - strand, within fimD at 895.755 kb on - strand, within fimD at 895.755 kb on - strand, within fimD at 895.755 kb on - strand, within fimD at 895.755 kb on - strand, within fimD at 895.755 kb on - strand, within fimD at 895.757 kb on + strand, within fimD at 895.773 kb on - strand, within fimD at 895.773 kb on - strand, within fimD at 895.797 kb on + strand, within fimD at 895.798 kb on - strand, within fimD at 895.974 kb on + strand, within fimD at 895.982 kb on + strand, within fimD at 895.983 kb on - strand, within fimD at 895.983 kb on - strand, within fimD at 895.983 kb on - strand, within fimD at 895.983 kb on - strand, within fimD at 896.014 kb on + strand, within fimD at 896.014 kb on + strand, within fimD at 896.123 kb on + strand, within fimD at 896.123 kb on + strand, within fimD at 896.170 kb on + strand, within fimD at 896.190 kb on + strand, within fimD at 896.247 kb on - strand, within fimD at 896.356 kb on - strand, within fimD at 896.357 kb on + strand, within fimD at 896.358 kb on - strand, within fimD at 896.358 kb on - strand, within fimD at 896.413 kb on - strand, within fimD at 896.425 kb on - strand, within fimD at 896.466 kb on + strand, within fimD at 896.467 kb on - strand, within fimD at 896.469 kb on + strand, within fimD at 896.469 kb on + strand, within fimD at 896.469 kb on + strand, within fimD at 896.481 kb on - strand, within fimD at 896.511 kb on + strand, within fimD at 896.511 kb on + strand, within fimD at 896.516 kb on + strand, within fimD at 896.516 kb on + strand, within fimD at 896.517 kb on - strand, within fimD at 896.517 kb on - strand, within fimD at 896.521 kb on - strand, within fimD at 896.521 kb on - strand, within fimD at 896.541 kb on + strand, within fimD at 896.595 kb on - strand, within fimD at 896.605 kb on + strand, within fimD at 896.605 kb on + strand, within fimD at 896.605 kb on + strand, within fimD at 896.606 kb on - strand, within fimD at 896.606 kb on - strand, within fimD at 896.606 kb on - strand, within fimD at 896.610 kb on + strand, within fimD at 896.611 kb on - strand, within fimD at 896.611 kb on - strand, within fimD at 896.611 kb on - strand, within fimD at 896.611 kb on - strand, within fimD at 896.681 kb on + strand, within fimD at 896.681 kb on + strand, within fimD at 896.682 kb on - strand, within fimD at 896.706 kb on - strand, within fimD at 896.706 kb on - strand, within fimD at 896.725 kb on - strand, within fimD at 896.740 kb on - strand, within fimD at 896.967 kb on + strand at 897.058 kb on + strand at 897.059 kb on - strand at 897.144 kb on + strand at 897.144 kb on + strand at 897.145 kb on - strand at 897.167 kb on + strand at 897.210 kb on + strand at 897.211 kb on - strand at 897.213 kb on + strand at 897.213 kb on + strand at 897.214 kb on - strand at 897.246 kb on + strand, within lfpB at 897.254 kb on - strand, within lfpB at 897.288 kb on + strand, within lfpB at 897.288 kb on + strand, within lfpB at 897.336 kb on + strand, within lfpB at 897.464 kb on - strand, within lfpB at 897.519 kb on + strand, within lfpB at 897.696 kb on - strand, within lfpB at 898.072 kb on + strand, within lpfA-O113 at 898.094 kb on + strand, within lpfA-O113 at 898.106 kb on + strand, within lpfA-O113 at 898.131 kb on - strand, within lpfA-O113
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 893,631 + +0.3 893,632 - +1.0 893,653 + BNILDI_04520 0.11 -1.0 893,653 + BNILDI_04520 0.11 -0.1 893,654 - BNILDI_04520 0.11 +1.2 893,757 + BNILDI_04520 0.21 -2.0 893,804 + BNILDI_04520 0.25 -2.9 893,805 - BNILDI_04520 0.25 -0.6 893,805 - BNILDI_04520 0.25 -3.6 894,252 + BNILDI_04520 0.67 +0.4 894,252 + BNILDI_04520 0.67 +1.0 894,254 + BNILDI_04520 0.67 +0.0 894,348 - BNILDI_04520 0.76 -0.4 894,533 + +2.1 894,534 - +1.2 894,550 - -1.9 894,554 + -0.1 894,598 + -0.4 894,620 + -0.9 894,621 - +0.9 894,726 + +2.1 894,727 - -0.1 894,758 + -1.6 894,856 + +0.4 894,856 + +0.9 894,946 - fimD BNILDI_04525 0.13 +0.2 894,949 - fimD BNILDI_04525 0.13 +0.4 894,959 - fimD BNILDI_04525 0.13 -0.5 894,977 + fimD BNILDI_04525 0.14 +1.5 894,978 - fimD BNILDI_04525 0.14 -0.3 894,978 - fimD BNILDI_04525 0.14 +1.0 895,069 - fimD BNILDI_04525 0.18 +1.0 895,071 + fimD BNILDI_04525 0.18 -2.2 895,076 - fimD BNILDI_04525 0.18 +0.8 895,076 - fimD BNILDI_04525 0.18 +0.5 895,116 + fimD BNILDI_04525 0.20 -0.0 895,117 - fimD BNILDI_04525 0.20 +0.6 895,117 - fimD BNILDI_04525 0.20 -1.3 895,117 - fimD BNILDI_04525 0.20 +0.7 895,126 + fimD BNILDI_04525 0.20 +0.4 895,127 - fimD BNILDI_04525 0.20 -0.4 895,138 + fimD BNILDI_04525 0.21 -1.4 895,139 - fimD BNILDI_04525 0.21 -3.4 895,139 - fimD BNILDI_04525 0.21 -0.2 895,185 - fimD BNILDI_04525 0.22 +0.1 895,211 + fimD BNILDI_04525 0.23 +0.4 895,211 + fimD BNILDI_04525 0.23 +0.3 895,212 - fimD BNILDI_04525 0.24 -2.5 895,218 - fimD BNILDI_04525 0.24 +1.2 895,238 + fimD BNILDI_04525 0.25 +0.7 895,250 + fimD BNILDI_04525 0.25 -0.1 895,250 + fimD BNILDI_04525 0.25 -0.7 895,251 - fimD BNILDI_04525 0.25 +0.9 895,263 + fimD BNILDI_04525 0.26 +1.4 895,263 + fimD BNILDI_04525 0.26 +1.3 895,263 + fimD BNILDI_04525 0.26 +0.3 895,264 - fimD BNILDI_04525 0.26 +0.2 895,264 - fimD BNILDI_04525 0.26 +1.1 895,264 - fimD BNILDI_04525 0.26 +1.3 895,295 + fimD BNILDI_04525 0.27 -1.6 895,296 - fimD BNILDI_04525 0.27 +1.3 895,296 - fimD BNILDI_04525 0.27 -0.4 895,296 - fimD BNILDI_04525 0.27 +0.1 895,307 - fimD BNILDI_04525 0.27 -0.3 895,397 + fimD BNILDI_04525 0.31 +0.5 895,397 + fimD BNILDI_04525 0.31 -0.1 895,398 - fimD BNILDI_04525 0.31 -0.6 895,398 - fimD BNILDI_04525 0.31 +0.5 895,410 + fimD BNILDI_04525 0.31 -0.0 895,410 + fimD BNILDI_04525 0.31 -3.2 895,411 - fimD BNILDI_04525 0.31 +0.1 895,441 + fimD BNILDI_04525 0.33 -1.0 895,454 + fimD BNILDI_04525 0.33 +0.6 895,455 - fimD BNILDI_04525 0.33 +0.1 895,520 + fimD BNILDI_04525 0.36 +0.3 895,521 - fimD BNILDI_04525 0.36 +1.7 895,599 + fimD BNILDI_04525 0.39 -0.7 895,599 + fimD BNILDI_04525 0.39 -2.8 895,633 + fimD BNILDI_04525 0.40 -0.8 895,633 + fimD BNILDI_04525 0.40 +0.6 895,634 - fimD BNILDI_04525 0.40 +0.2 895,753 - fimD BNILDI_04525 0.45 +0.4 895,754 + fimD BNILDI_04525 0.45 -1.1 895,754 + fimD BNILDI_04525 0.45 +1.1 895,754 + fimD BNILDI_04525 0.45 -2.2 895,754 + fimD BNILDI_04525 0.45 -0.0 895,755 - fimD BNILDI_04525 0.45 -0.1 895,755 - fimD BNILDI_04525 0.45 -1.4 895,755 - fimD BNILDI_04525 0.45 +0.4 895,755 - fimD BNILDI_04525 0.45 -0.7 895,755 - fimD BNILDI_04525 0.45 +0.0 895,755 - fimD BNILDI_04525 0.45 -1.4 895,757 + fimD BNILDI_04525 0.45 -2.3 895,773 - fimD BNILDI_04525 0.46 -0.2 895,773 - fimD BNILDI_04525 0.46 +1.0 895,797 + fimD BNILDI_04525 0.47 +1.3 895,798 - fimD BNILDI_04525 0.47 +0.7 895,974 + fimD BNILDI_04525 0.54 -1.0 895,982 + fimD BNILDI_04525 0.54 +1.3 895,983 - fimD BNILDI_04525 0.54 -0.1 895,983 - fimD BNILDI_04525 0.54 -0.0 895,983 - fimD BNILDI_04525 0.54 +1.1 895,983 - fimD BNILDI_04525 0.54 +0.4 896,014 + fimD BNILDI_04525 0.55 -0.0 896,014 + fimD BNILDI_04525 0.55 +0.2 896,123 + fimD BNILDI_04525 0.60 +0.4 896,123 + fimD BNILDI_04525 0.60 +1.3 896,170 + fimD BNILDI_04525 0.61 -0.1 896,190 + fimD BNILDI_04525 0.62 +0.4 896,247 - fimD BNILDI_04525 0.65 -0.6 896,356 - fimD BNILDI_04525 0.69 +2.2 896,357 + fimD BNILDI_04525 0.69 -2.1 896,358 - fimD BNILDI_04525 0.69 +2.7 896,358 - fimD BNILDI_04525 0.69 +0.5 896,413 - fimD BNILDI_04525 0.71 +2.3 896,425 - fimD BNILDI_04525 0.72 -1.3 896,466 + fimD BNILDI_04525 0.73 +0.9 896,467 - fimD BNILDI_04525 0.73 -0.2 896,469 + fimD BNILDI_04525 0.73 -0.7 896,469 + fimD BNILDI_04525 0.73 -1.9 896,469 + fimD BNILDI_04525 0.73 +0.7 896,481 - fimD BNILDI_04525 0.74 +1.8 896,511 + fimD BNILDI_04525 0.75 +0.1 896,511 + fimD BNILDI_04525 0.75 -2.4 896,516 + fimD BNILDI_04525 0.75 +0.2 896,516 + fimD BNILDI_04525 0.75 -3.5 896,517 - fimD BNILDI_04525 0.75 -0.1 896,517 - fimD BNILDI_04525 0.75 -0.7 896,521 - fimD BNILDI_04525 0.75 +0.4 896,521 - fimD BNILDI_04525 0.75 +0.4 896,541 + fimD BNILDI_04525 0.76 +0.7 896,595 - fimD BNILDI_04525 0.78 -0.8 896,605 + fimD BNILDI_04525 0.79 +0.2 896,605 + fimD BNILDI_04525 0.79 -0.5 896,605 + fimD BNILDI_04525 0.79 -2.6 896,606 - fimD BNILDI_04525 0.79 +0.0 896,606 - fimD BNILDI_04525 0.79 +0.4 896,606 - fimD BNILDI_04525 0.79 -0.3 896,610 + fimD BNILDI_04525 0.79 +1.2 896,611 - fimD BNILDI_04525 0.79 +0.7 896,611 - fimD BNILDI_04525 0.79 +1.1 896,611 - fimD BNILDI_04525 0.79 +0.4 896,611 - fimD BNILDI_04525 0.79 -0.5 896,681 + fimD BNILDI_04525 0.82 -0.4 896,681 + fimD BNILDI_04525 0.82 +0.5 896,682 - fimD BNILDI_04525 0.82 +1.8 896,706 - fimD BNILDI_04525 0.83 +0.2 896,706 - fimD BNILDI_04525 0.83 +0.4 896,725 - fimD BNILDI_04525 0.83 +1.6 896,740 - fimD BNILDI_04525 0.84 -0.2 896,967 + +0.5 897,058 + +1.3 897,059 - +0.0 897,144 + +1.1 897,144 + +0.6 897,145 - +3.6 897,167 + +0.2 897,210 + +2.9 897,211 - -0.0 897,213 + +0.3 897,213 + -3.2 897,214 - +0.6 897,246 + lfpB BNILDI_04530 0.11 +0.4 897,254 - lfpB BNILDI_04530 0.12 +1.1 897,288 + lfpB BNILDI_04530 0.17 -0.6 897,288 + lfpB BNILDI_04530 0.17 +0.7 897,336 + lfpB BNILDI_04530 0.23 +0.9 897,464 - lfpB BNILDI_04530 0.41 +0.6 897,519 + lfpB BNILDI_04530 0.48 +1.8 897,696 - lfpB BNILDI_04530 0.72 -0.2 898,072 + lpfA-O113 BNILDI_04535 0.22 -0.7 898,094 + lpfA-O113 BNILDI_04535 0.26 +0.5 898,106 + lpfA-O113 BNILDI_04535 0.28 -1.8 898,131 - lpfA-O113 BNILDI_04535 0.32 -1.8
Or see this region's nucleotide sequence