Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yieK and BNILDI_04465 are separated by 226 nucleotides BNILDI_04465 and bglH are separated by 26 nucleotides
BNILDI_04460: yieK - glucosamine-6-phosphate deaminase, at 880,536 to 881,252
yieK
BNILDI_04465: BNILDI_04465 - alpha/beta hydrolase-fold protein, at 881,479 to 882,432
_04465
BNILDI_04470: bglH - carbohydrate-specific porin BglH, at 882,459 to 884,075
bglH
Position (kb) 881
882
883 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 880.481 kb on + strand at 880.481 kb on + strand at 880.512 kb on - strand at 880.537 kb on + strand at 880.538 kb on - strand at 880.538 kb on - strand at 880.538 kb on - strand at 880.563 kb on - strand at 880.680 kb on + strand, within yieK at 880.681 kb on - strand, within yieK at 880.729 kb on + strand, within yieK at 880.729 kb on + strand, within yieK at 880.730 kb on - strand, within yieK at 880.730 kb on - strand, within yieK at 880.781 kb on + strand, within yieK at 880.781 kb on + strand, within yieK at 880.838 kb on + strand, within yieK at 880.940 kb on + strand, within yieK at 880.941 kb on - strand, within yieK at 880.946 kb on + strand, within yieK at 880.961 kb on + strand, within yieK at 880.962 kb on - strand, within yieK at 881.001 kb on - strand, within yieK at 881.065 kb on + strand, within yieK at 881.066 kb on - strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.071 kb on + strand, within yieK at 881.072 kb on - strand, within yieK at 881.093 kb on + strand, within yieK at 881.093 kb on + strand, within yieK at 881.117 kb on - strand, within yieK at 881.122 kb on + strand, within yieK at 881.122 kb on + strand, within yieK at 881.122 kb on + strand, within yieK at 881.122 kb on + strand, within yieK at 881.123 kb on - strand, within yieK at 881.123 kb on - strand, within yieK at 881.183 kb on + strand at 881.184 kb on - strand at 881.186 kb on - strand at 881.269 kb on - strand at 881.298 kb on + strand at 881.298 kb on + strand at 881.450 kb on + strand at 881.464 kb on + strand at 881.464 kb on + strand at 881.465 kb on - strand at 881.522 kb on - strand at 881.641 kb on - strand, within BNILDI_04465 at 881.721 kb on + strand, within BNILDI_04465 at 881.722 kb on - strand, within BNILDI_04465 at 881.895 kb on - strand, within BNILDI_04465 at 881.900 kb on + strand, within BNILDI_04465 at 881.933 kb on + strand, within BNILDI_04465 at 881.954 kb on + strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.955 kb on - strand, within BNILDI_04465 at 881.991 kb on - strand, within BNILDI_04465 at 881.996 kb on - strand, within BNILDI_04465 at 882.039 kb on - strand, within BNILDI_04465 at 882.106 kb on - strand, within BNILDI_04465 at 882.118 kb on + strand, within BNILDI_04465 at 882.118 kb on + strand, within BNILDI_04465 at 882.165 kb on + strand, within BNILDI_04465 at 882.216 kb on + strand, within BNILDI_04465 at 882.318 kb on - strand, within BNILDI_04465 at 882.557 kb on - strand at 882.557 kb on - strand at 882.566 kb on - strand at 882.596 kb on + strand at 882.718 kb on + strand, within bglH at 882.734 kb on - strand, within bglH at 882.790 kb on + strand, within bglH at 882.796 kb on + strand, within bglH at 882.797 kb on - strand, within bglH at 882.840 kb on - strand, within bglH at 882.856 kb on + strand, within bglH at 882.911 kb on - strand, within bglH at 883.073 kb on - strand, within bglH at 883.083 kb on - strand, within bglH at 883.129 kb on + strand, within bglH at 883.178 kb on + strand, within bglH at 883.197 kb on - strand, within bglH at 883.238 kb on - strand, within bglH at 883.308 kb on + strand, within bglH at 883.328 kb on + strand, within bglH at 883.328 kb on + strand, within bglH at 883.383 kb on - strand, within bglH
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 880,481 + +0.0 880,481 + +0.0 880,512 - +0.4 880,537 + -2.0 880,538 - -0.1 880,538 - -0.4 880,538 - -4.2 880,563 - -0.3 880,680 + yieK BNILDI_04460 0.20 -0.4 880,681 - yieK BNILDI_04460 0.20 -3.4 880,729 + yieK BNILDI_04460 0.27 +0.3 880,729 + yieK BNILDI_04460 0.27 +0.6 880,730 - yieK BNILDI_04460 0.27 -0.3 880,730 - yieK BNILDI_04460 0.27 +0.8 880,781 + yieK BNILDI_04460 0.34 -0.7 880,781 + yieK BNILDI_04460 0.34 -1.9 880,838 + yieK BNILDI_04460 0.42 -3.2 880,940 + yieK BNILDI_04460 0.56 -1.0 880,941 - yieK BNILDI_04460 0.56 +0.8 880,946 + yieK BNILDI_04460 0.57 +0.6 880,961 + yieK BNILDI_04460 0.59 +0.9 880,962 - yieK BNILDI_04460 0.59 +0.8 881,001 - yieK BNILDI_04460 0.65 -3.2 881,065 + yieK BNILDI_04460 0.74 -0.2 881,066 - yieK BNILDI_04460 0.74 -2.6 881,071 + yieK BNILDI_04460 0.75 -1.7 881,071 + yieK BNILDI_04460 0.75 +1.0 881,071 + yieK BNILDI_04460 0.75 +0.0 881,071 + yieK BNILDI_04460 0.75 -0.1 881,071 + yieK BNILDI_04460 0.75 -3.1 881,071 + yieK BNILDI_04460 0.75 +0.0 881,072 - yieK BNILDI_04460 0.75 -0.4 881,093 + yieK BNILDI_04460 0.78 +0.3 881,093 + yieK BNILDI_04460 0.78 +1.0 881,117 - yieK BNILDI_04460 0.81 -2.9 881,122 + yieK BNILDI_04460 0.82 +3.1 881,122 + yieK BNILDI_04460 0.82 +1.1 881,122 + yieK BNILDI_04460 0.82 +0.7 881,122 + yieK BNILDI_04460 0.82 -2.3 881,123 - yieK BNILDI_04460 0.82 +0.2 881,123 - yieK BNILDI_04460 0.82 +1.3 881,183 + -3.5 881,184 - +1.3 881,186 - +0.2 881,269 - +0.7 881,298 + -3.1 881,298 + -1.4 881,450 + +1.2 881,464 + +0.5 881,464 + -0.0 881,465 - -3.9 881,522 - -2.4 881,641 - BNILDI_04465 0.17 -1.1 881,721 + BNILDI_04465 0.25 +0.8 881,722 - BNILDI_04465 0.25 +1.5 881,895 - BNILDI_04465 0.44 -0.5 881,900 + BNILDI_04465 0.44 +0.7 881,933 + BNILDI_04465 0.48 +0.7 881,954 + BNILDI_04465 0.50 +0.5 881,955 - BNILDI_04465 0.50 +1.6 881,955 - BNILDI_04465 0.50 -0.1 881,955 - BNILDI_04465 0.50 +1.0 881,955 - BNILDI_04465 0.50 +0.4 881,991 - BNILDI_04465 0.54 +0.1 881,996 - BNILDI_04465 0.54 +0.2 882,039 - BNILDI_04465 0.59 -1.2 882,106 - BNILDI_04465 0.66 -3.1 882,118 + BNILDI_04465 0.67 -3.3 882,118 + BNILDI_04465 0.67 -0.1 882,165 + BNILDI_04465 0.72 +0.6 882,216 + BNILDI_04465 0.77 +0.9 882,318 - BNILDI_04465 0.88 +1.5 882,557 - -0.1 882,557 - +0.4 882,566 - +2.0 882,596 + +0.4 882,718 + bglH BNILDI_04470 0.16 +1.9 882,734 - bglH BNILDI_04470 0.17 -3.3 882,790 + bglH BNILDI_04470 0.20 +1.7 882,796 + bglH BNILDI_04470 0.21 +0.5 882,797 - bglH BNILDI_04470 0.21 -0.3 882,840 - bglH BNILDI_04470 0.24 +0.6 882,856 + bglH BNILDI_04470 0.25 +0.7 882,911 - bglH BNILDI_04470 0.28 +1.7 883,073 - bglH BNILDI_04470 0.38 -0.1 883,083 - bglH BNILDI_04470 0.39 +0.7 883,129 + bglH BNILDI_04470 0.41 +1.6 883,178 + bglH BNILDI_04470 0.44 -1.0 883,197 - bglH BNILDI_04470 0.46 -2.1 883,238 - bglH BNILDI_04470 0.48 -1.0 883,308 + bglH BNILDI_04470 0.53 -1.1 883,328 + bglH BNILDI_04470 0.54 -3.1 883,328 + bglH BNILDI_04470 0.54 -0.7 883,383 - bglH BNILDI_04470 0.57 -2.0
Or see this region's nucleotide sequence