Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yidK and yidL are separated by 166 nucleotides yidL and celF overlap by 4 nucleotides celF and glvG overlap by 1 nucleotides glvG and glvC overlap by 1 nucleotides
BNILDI_04255: yidK - solute:sodium symporter family transporter, at 840,878 to 842,593
yidK
BNILDI_04260: yidL - Uncharacterized HTH-type transcriptional regulator YidL, at 842,760 to 843,653
yidL
BNILDI_04265: celF - 6-phospho-alpha-glucosidase, at 843,650 to 843,826
celF
BNILDI_04270: glvG - Putative inactive 6-phospho-alpha-glucosidase, at 843,826 to 844,464
glvG
BNILDI_04275: glvC - PTS sugar transporter subunit IIB, at 844,464 to 846,080
glvC
Position (kb) 842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 841.822 kb on - strand, within yidK at 841.942 kb on + strand, within yidK at 841.942 kb on + strand, within yidK at 841.977 kb on - strand, within yidK at 842.064 kb on + strand, within yidK at 842.064 kb on + strand, within yidK at 842.094 kb on - strand, within yidK at 842.179 kb on - strand, within yidK at 842.239 kb on + strand, within yidK at 842.239 kb on + strand, within yidK at 842.252 kb on - strand, within yidK at 842.388 kb on + strand, within yidK at 842.491 kb on - strand at 842.558 kb on - strand at 842.609 kb on + strand at 842.718 kb on + strand at 842.738 kb on - strand at 842.756 kb on + strand at 842.877 kb on + strand, within yidL at 843.004 kb on + strand, within yidL at 843.005 kb on - strand, within yidL at 843.024 kb on - strand, within yidL at 843.026 kb on + strand, within yidL at 843.027 kb on - strand, within yidL at 843.167 kb on + strand, within yidL at 843.200 kb on - strand, within yidL at 843.338 kb on - strand, within yidL at 843.368 kb on - strand, within yidL at 843.530 kb on + strand, within yidL at 843.614 kb on + strand at 843.615 kb on - strand at 843.651 kb on + strand at 843.670 kb on - strand, within celF at 843.745 kb on + strand, within celF at 843.745 kb on + strand, within celF at 843.745 kb on + strand, within celF at 843.746 kb on - strand, within celF at 843.769 kb on - strand, within celF at 844.031 kb on + strand, within glvG at 844.070 kb on + strand, within glvG at 844.071 kb on - strand, within glvG at 844.071 kb on - strand, within glvG at 844.071 kb on - strand, within glvG at 844.266 kb on - strand, within glvG at 844.270 kb on - strand, within glvG at 844.308 kb on + strand, within glvG at 844.353 kb on - strand, within glvG at 844.465 kb on + strand at 844.465 kb on + strand at 844.466 kb on - strand at 844.466 kb on - strand at 844.467 kb on + strand at 844.467 kb on + strand at 844.467 kb on + strand at 844.511 kb on + strand at 844.512 kb on - strand at 844.516 kb on - strand at 844.520 kb on + strand at 844.545 kb on + strand at 844.546 kb on - strand at 844.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 841,822 - yidK BNILDI_04255 0.55 -1.4 841,942 + yidK BNILDI_04255 0.62 -1.5 841,942 + yidK BNILDI_04255 0.62 -0.7 841,977 - yidK BNILDI_04255 0.64 +2.5 842,064 + yidK BNILDI_04255 0.69 +0.3 842,064 + yidK BNILDI_04255 0.69 -1.7 842,094 - yidK BNILDI_04255 0.71 +1.4 842,179 - yidK BNILDI_04255 0.76 +0.3 842,239 + yidK BNILDI_04255 0.79 -1.0 842,239 + yidK BNILDI_04255 0.79 -0.1 842,252 - yidK BNILDI_04255 0.80 +0.1 842,388 + yidK BNILDI_04255 0.88 +1.0 842,491 - -3.3 842,558 - -1.3 842,609 + +1.0 842,718 + +0.8 842,738 - +0.2 842,756 + -2.6 842,877 + yidL BNILDI_04260 0.13 -0.4 843,004 + yidL BNILDI_04260 0.27 +0.3 843,005 - yidL BNILDI_04260 0.27 -0.9 843,024 - yidL BNILDI_04260 0.30 -1.5 843,026 + yidL BNILDI_04260 0.30 -2.0 843,027 - yidL BNILDI_04260 0.30 +0.5 843,167 + yidL BNILDI_04260 0.46 +0.2 843,200 - yidL BNILDI_04260 0.49 -1.0 843,338 - yidL BNILDI_04260 0.65 -0.2 843,368 - yidL BNILDI_04260 0.68 +0.2 843,530 + yidL BNILDI_04260 0.86 -0.0 843,614 + -0.8 843,615 - -0.7 843,651 + -2.3 843,670 - celF BNILDI_04265 0.11 -0.2 843,745 + celF BNILDI_04265 0.54 +1.1 843,745 + celF BNILDI_04265 0.54 -2.4 843,745 + celF BNILDI_04265 0.54 +0.2 843,746 - celF BNILDI_04265 0.54 -0.2 843,769 - celF BNILDI_04265 0.67 +0.6 844,031 + glvG BNILDI_04270 0.32 +2.9 844,070 + glvG BNILDI_04270 0.38 +0.4 844,071 - glvG BNILDI_04270 0.38 -0.3 844,071 - glvG BNILDI_04270 0.38 +0.5 844,071 - glvG BNILDI_04270 0.38 -0.1 844,266 - glvG BNILDI_04270 0.69 -0.4 844,270 - glvG BNILDI_04270 0.69 -0.6 844,308 + glvG BNILDI_04270 0.75 +0.4 844,353 - glvG BNILDI_04270 0.82 -0.5 844,465 + -0.8 844,465 + -3.4 844,466 - -1.9 844,466 - -2.1 844,467 + -2.0 844,467 + -0.1 844,467 + -0.2 844,511 + +0.1 844,512 - -0.6 844,516 - -1.4 844,520 + -0.2 844,545 + -0.2 844,546 - -1.5 844,546 - +0.5
Or see this region's nucleotide sequence