Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtE and mdtF are separated by 24 nucleotides mdtF and BNILDI_03320 overlap by 64 nucleotides BNILDI_03320 and gadW are separated by 144 nucleotides
BNILDI_03310: mdtE - multidrug transporter subunit MdtE, at 638,885 to 640,042
mdtE
BNILDI_03315: mdtF - multidrug efflux pump RND permease MdtF, at 640,067 to 643,180
mdtF
BNILDI_03320: BNILDI_03320 - hypothetical protein, at 643,117 to 643,398
_03320
BNILDI_03325: gadW - acid resistance transcriptional activator GadW, at 643,543 to 644,271
gadW
Position (kb) 640
641
642
643
644 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 639.075 kb on + strand, within mdtE at 639.075 kb on + strand, within mdtE at 639.076 kb on - strand, within mdtE at 639.097 kb on + strand, within mdtE at 639.098 kb on - strand, within mdtE at 639.098 kb on - strand, within mdtE at 639.116 kb on - strand, within mdtE at 639.174 kb on + strand, within mdtE at 639.281 kb on + strand, within mdtE at 639.300 kb on - strand, within mdtE at 639.544 kb on - strand, within mdtE at 639.746 kb on + strand, within mdtE at 639.746 kb on + strand, within mdtE at 639.747 kb on - strand, within mdtE at 639.747 kb on - strand, within mdtE at 639.773 kb on - strand, within mdtE at 639.786 kb on + strand, within mdtE at 639.786 kb on + strand, within mdtE at 639.787 kb on - strand, within mdtE at 640.054 kb on + strand at 640.077 kb on - strand at 640.077 kb on - strand at 640.077 kb on - strand at 640.108 kb on - strand at 640.108 kb on - strand at 640.108 kb on - strand at 640.118 kb on - strand at 640.118 kb on - strand at 640.120 kb on + strand at 640.120 kb on + strand at 640.120 kb on + strand at 640.121 kb on - strand at 640.207 kb on + strand at 640.212 kb on - strand at 640.271 kb on - strand at 640.271 kb on - strand at 640.271 kb on - strand at 640.295 kb on + strand at 640.295 kb on + strand at 640.295 kb on + strand at 640.295 kb on + strand at 640.295 kb on + strand at 640.295 kb on + strand at 640.295 kb on + strand at 640.296 kb on - strand at 640.296 kb on - strand at 640.296 kb on - strand at 640.469 kb on - strand, within mdtF at 640.492 kb on + strand, within mdtF at 640.493 kb on - strand, within mdtF at 640.493 kb on - strand, within mdtF at 640.535 kb on + strand, within mdtF at 640.536 kb on - strand, within mdtF at 640.536 kb on - strand, within mdtF at 640.536 kb on - strand, within mdtF at 640.539 kb on + strand, within mdtF at 640.540 kb on - strand, within mdtF at 640.540 kb on - strand, within mdtF at 640.549 kb on + strand, within mdtF at 640.550 kb on - strand, within mdtF at 640.590 kb on + strand, within mdtF at 640.591 kb on - strand, within mdtF at 640.653 kb on - strand, within mdtF at 640.755 kb on + strand, within mdtF at 640.756 kb on - strand, within mdtF at 640.908 kb on - strand, within mdtF at 641.039 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.248 kb on + strand, within mdtF at 641.278 kb on - strand, within mdtF at 641.335 kb on + strand, within mdtF at 641.336 kb on - strand, within mdtF at 641.336 kb on - strand, within mdtF at 641.340 kb on + strand, within mdtF at 641.341 kb on - strand, within mdtF at 641.341 kb on - strand, within mdtF at 641.426 kb on - strand, within mdtF at 641.512 kb on - strand, within mdtF at 641.639 kb on + strand, within mdtF at 641.639 kb on + strand, within mdtF at 641.639 kb on + strand, within mdtF at 641.640 kb on - strand, within mdtF at 641.694 kb on - strand, within mdtF at 641.734 kb on + strand, within mdtF at 641.735 kb on - strand, within mdtF at 641.776 kb on + strand, within mdtF at 641.776 kb on + strand, within mdtF at 641.777 kb on - strand, within mdtF at 641.777 kb on - strand, within mdtF at 641.794 kb on - strand, within mdtF at 641.794 kb on - strand, within mdtF at 641.849 kb on + strand, within mdtF at 641.853 kb on - strand, within mdtF at 642.124 kb on + strand, within mdtF at 642.332 kb on + strand, within mdtF at 642.375 kb on - strand, within mdtF at 642.428 kb on + strand, within mdtF at 642.428 kb on + strand, within mdtF at 642.429 kb on - strand, within mdtF at 642.432 kb on + strand, within mdtF at 642.432 kb on + strand, within mdtF at 642.433 kb on - strand, within mdtF at 642.433 kb on - strand, within mdtF at 642.433 kb on - strand, within mdtF at 642.491 kb on + strand, within mdtF at 642.515 kb on + strand, within mdtF at 642.516 kb on - strand, within mdtF at 642.580 kb on + strand, within mdtF at 642.650 kb on + strand, within mdtF at 642.690 kb on - strand, within mdtF at 642.827 kb on - strand, within mdtF at 642.827 kb on - strand, within mdtF at 642.836 kb on + strand, within mdtF at 643.006 kb on + strand at 643.178 kb on + strand at 643.195 kb on + strand, within BNILDI_03320 at 643.274 kb on - strand, within BNILDI_03320 at 643.274 kb on - strand, within BNILDI_03320 at 643.283 kb on - strand, within BNILDI_03320 at 643.283 kb on - strand, within BNILDI_03320 at 643.285 kb on + strand, within BNILDI_03320 at 643.286 kb on - strand, within BNILDI_03320 at 643.286 kb on - strand, within BNILDI_03320 at 643.345 kb on - strand, within BNILDI_03320 at 643.345 kb on - strand, within BNILDI_03320 at 643.384 kb on - strand at 643.426 kb on + strand at 643.427 kb on - strand at 643.457 kb on - strand at 643.524 kb on + strand at 643.540 kb on - strand at 643.540 kb on - strand at 643.596 kb on - strand at 643.615 kb on + strand at 643.615 kb on + strand at 643.623 kb on - strand, within gadW at 643.623 kb on - strand, within gadW at 643.623 kb on - strand, within gadW at 643.629 kb on + strand, within gadW at 643.630 kb on - strand, within gadW at 643.635 kb on + strand, within gadW at 643.637 kb on + strand, within gadW at 643.657 kb on - strand, within gadW at 643.659 kb on + strand, within gadW at 643.659 kb on + strand, within gadW at 643.659 kb on + strand, within gadW at 643.659 kb on + strand, within gadW at 643.660 kb on - strand, within gadW at 643.660 kb on - strand, within gadW at 643.724 kb on - strand, within gadW at 643.785 kb on - strand, within gadW at 643.785 kb on - strand, within gadW at 643.836 kb on + strand, within gadW at 643.837 kb on - strand, within gadW at 643.905 kb on + strand, within gadW at 643.935 kb on - strand, within gadW at 643.941 kb on + strand, within gadW at 643.941 kb on + strand, within gadW at 643.942 kb on - strand, within gadW at 643.942 kb on - strand, within gadW at 643.942 kb on - strand, within gadW at 644.047 kb on - strand, within gadW at 644.051 kb on - strand, within gadW at 644.051 kb on - strand, within gadW at 644.051 kb on - strand, within gadW
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 639,075 + mdtE BNILDI_03310 0.16 +0.2 639,075 + mdtE BNILDI_03310 0.16 +0.1 639,076 - mdtE BNILDI_03310 0.16 -1.1 639,097 + mdtE BNILDI_03310 0.18 -0.4 639,098 - mdtE BNILDI_03310 0.18 -0.5 639,098 - mdtE BNILDI_03310 0.18 -3.3 639,116 - mdtE BNILDI_03310 0.20 -0.3 639,174 + mdtE BNILDI_03310 0.25 +1.0 639,281 + mdtE BNILDI_03310 0.34 -0.3 639,300 - mdtE BNILDI_03310 0.36 +0.9 639,544 - mdtE BNILDI_03310 0.57 -0.2 639,746 + mdtE BNILDI_03310 0.74 -0.5 639,746 + mdtE BNILDI_03310 0.74 -1.2 639,747 - mdtE BNILDI_03310 0.74 -0.1 639,747 - mdtE BNILDI_03310 0.74 +0.2 639,773 - mdtE BNILDI_03310 0.77 -0.5 639,786 + mdtE BNILDI_03310 0.78 -1.6 639,786 + mdtE BNILDI_03310 0.78 -1.2 639,787 - mdtE BNILDI_03310 0.78 +1.2 640,054 + +0.4 640,077 - -0.5 640,077 - +1.1 640,077 - +0.1 640,108 - -0.5 640,108 - +0.1 640,108 - +1.0 640,118 - -0.4 640,118 - +0.7 640,120 + +0.4 640,120 + -0.2 640,120 + +0.3 640,121 - +0.0 640,207 + +1.1 640,212 - +1.6 640,271 - +0.4 640,271 - -0.3 640,271 - +0.4 640,295 + -1.0 640,295 + -0.1 640,295 + -0.1 640,295 + -0.5 640,295 + +0.6 640,295 + +1.8 640,295 + -1.6 640,296 - -1.9 640,296 - +0.1 640,296 - +0.4 640,469 - mdtF BNILDI_03315 0.13 -0.9 640,492 + mdtF BNILDI_03315 0.14 -0.9 640,493 - mdtF BNILDI_03315 0.14 -1.1 640,493 - mdtF BNILDI_03315 0.14 -3.1 640,535 + mdtF BNILDI_03315 0.15 +0.9 640,536 - mdtF BNILDI_03315 0.15 +0.1 640,536 - mdtF BNILDI_03315 0.15 -0.1 640,536 - mdtF BNILDI_03315 0.15 +0.3 640,539 + mdtF BNILDI_03315 0.15 +0.7 640,540 - mdtF BNILDI_03315 0.15 -0.7 640,540 - mdtF BNILDI_03315 0.15 +0.5 640,549 + mdtF BNILDI_03315 0.15 -0.2 640,550 - mdtF BNILDI_03315 0.16 +1.1 640,590 + mdtF BNILDI_03315 0.17 +1.4 640,591 - mdtF BNILDI_03315 0.17 +0.1 640,653 - mdtF BNILDI_03315 0.19 -1.3 640,755 + mdtF BNILDI_03315 0.22 +1.0 640,756 - mdtF BNILDI_03315 0.22 +0.5 640,908 - mdtF BNILDI_03315 0.27 +0.0 641,039 + mdtF BNILDI_03315 0.31 +2.0 641,248 + mdtF BNILDI_03315 0.38 +1.0 641,248 + mdtF BNILDI_03315 0.38 -1.3 641,248 + mdtF BNILDI_03315 0.38 -0.3 641,248 + mdtF BNILDI_03315 0.38 -2.2 641,248 + mdtF BNILDI_03315 0.38 +0.0 641,248 + mdtF BNILDI_03315 0.38 -0.1 641,248 + mdtF BNILDI_03315 0.38 +0.2 641,248 + mdtF BNILDI_03315 0.38 -1.7 641,248 + mdtF BNILDI_03315 0.38 -1.0 641,278 - mdtF BNILDI_03315 0.39 -0.7 641,335 + mdtF BNILDI_03315 0.41 -1.2 641,336 - mdtF BNILDI_03315 0.41 -0.7 641,336 - mdtF BNILDI_03315 0.41 +0.0 641,340 + mdtF BNILDI_03315 0.41 -0.4 641,341 - mdtF BNILDI_03315 0.41 +0.1 641,341 - mdtF BNILDI_03315 0.41 +1.0 641,426 - mdtF BNILDI_03315 0.44 -0.7 641,512 - mdtF BNILDI_03315 0.46 +1.4 641,639 + mdtF BNILDI_03315 0.50 -1.9 641,639 + mdtF BNILDI_03315 0.50 -0.9 641,639 + mdtF BNILDI_03315 0.50 -2.1 641,640 - mdtF BNILDI_03315 0.51 -0.0 641,694 - mdtF BNILDI_03315 0.52 +0.0 641,734 + mdtF BNILDI_03315 0.54 -0.1 641,735 - mdtF BNILDI_03315 0.54 +0.2 641,776 + mdtF BNILDI_03315 0.55 +2.1 641,776 + mdtF BNILDI_03315 0.55 +1.3 641,777 - mdtF BNILDI_03315 0.55 -3.1 641,777 - mdtF BNILDI_03315 0.55 +1.2 641,794 - mdtF BNILDI_03315 0.55 -0.3 641,794 - mdtF BNILDI_03315 0.55 +0.5 641,849 + mdtF BNILDI_03315 0.57 -0.1 641,853 - mdtF BNILDI_03315 0.57 +1.6 642,124 + mdtF BNILDI_03315 0.66 +1.6 642,332 + mdtF BNILDI_03315 0.73 -0.2 642,375 - mdtF BNILDI_03315 0.74 -0.5 642,428 + mdtF BNILDI_03315 0.76 -0.1 642,428 + mdtF BNILDI_03315 0.76 +0.4 642,429 - mdtF BNILDI_03315 0.76 -2.8 642,432 + mdtF BNILDI_03315 0.76 -0.9 642,432 + mdtF BNILDI_03315 0.76 -2.5 642,433 - mdtF BNILDI_03315 0.76 +0.9 642,433 - mdtF BNILDI_03315 0.76 +0.1 642,433 - mdtF BNILDI_03315 0.76 -0.2 642,491 + mdtF BNILDI_03315 0.78 +0.0 642,515 + mdtF BNILDI_03315 0.79 -0.5 642,516 - mdtF BNILDI_03315 0.79 +0.9 642,580 + mdtF BNILDI_03315 0.81 +0.6 642,650 + mdtF BNILDI_03315 0.83 -1.9 642,690 - mdtF BNILDI_03315 0.84 +1.3 642,827 - mdtF BNILDI_03315 0.89 -3.4 642,827 - mdtF BNILDI_03315 0.89 +0.3 642,836 + mdtF BNILDI_03315 0.89 +0.4 643,006 + +1.6 643,178 + +0.1 643,195 + BNILDI_03320 0.28 +0.3 643,274 - BNILDI_03320 0.56 +0.0 643,274 - BNILDI_03320 0.56 -0.1 643,283 - BNILDI_03320 0.59 +0.1 643,283 - BNILDI_03320 0.59 -1.1 643,285 + BNILDI_03320 0.60 -2.7 643,286 - BNILDI_03320 0.60 +0.2 643,286 - BNILDI_03320 0.60 +1.0 643,345 - BNILDI_03320 0.81 -0.5 643,345 - BNILDI_03320 0.81 +1.1 643,384 - -2.4 643,426 + -0.2 643,427 - -1.7 643,457 - +0.6 643,524 + +0.3 643,540 - -4.4 643,540 - -0.2 643,596 - -0.9 643,615 + -2.6 643,615 + +0.0 643,623 - gadW BNILDI_03325 0.11 +0.5 643,623 - gadW BNILDI_03325 0.11 -0.0 643,623 - gadW BNILDI_03325 0.11 -0.5 643,629 + gadW BNILDI_03325 0.12 +1.0 643,630 - gadW BNILDI_03325 0.12 +1.8 643,635 + gadW BNILDI_03325 0.13 +0.1 643,637 + gadW BNILDI_03325 0.13 -0.7 643,657 - gadW BNILDI_03325 0.16 +0.8 643,659 + gadW BNILDI_03325 0.16 -1.0 643,659 + gadW BNILDI_03325 0.16 -1.2 643,659 + gadW BNILDI_03325 0.16 -0.1 643,659 + gadW BNILDI_03325 0.16 -0.2 643,660 - gadW BNILDI_03325 0.16 +0.2 643,660 - gadW BNILDI_03325 0.16 +1.1 643,724 - gadW BNILDI_03325 0.25 +1.0 643,785 - gadW BNILDI_03325 0.33 +0.7 643,785 - gadW BNILDI_03325 0.33 -0.2 643,836 + gadW BNILDI_03325 0.40 -0.0 643,837 - gadW BNILDI_03325 0.40 +0.2 643,905 + gadW BNILDI_03325 0.50 +0.1 643,935 - gadW BNILDI_03325 0.54 -0.3 643,941 + gadW BNILDI_03325 0.55 +0.5 643,941 + gadW BNILDI_03325 0.55 +1.1 643,942 - gadW BNILDI_03325 0.55 -0.6 643,942 - gadW BNILDI_03325 0.55 -0.0 643,942 - gadW BNILDI_03325 0.55 -1.0 644,047 - gadW BNILDI_03325 0.69 +1.0 644,051 - gadW BNILDI_03325 0.70 +0.4 644,051 - gadW BNILDI_03325 0.70 +1.0 644,051 - gadW BNILDI_03325 0.70 -0.1
Or see this region's nucleotide sequence