Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yheS and yheT overlap by 1 nucleotides yheT and yheU overlap by 7 nucleotides yheU and prkB are separated by 53 nucleotides
BNILDI_02455: yheS - ABC transporter ATP-binding protein, at 463,260 to 465,173
yheS
BNILDI_02460: yheT - hydrolase, at 465,173 to 466,195
yheT
BNILDI_02465: yheU - YheU family protein, at 466,189 to 466,407
yheU
BNILDI_02470: prkB - phosphoribulokinase, at 466,461 to 467,330
prkB
Position (kb) 465
466
467 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 464.394 kb on + strand, within yheS at 464.441 kb on + strand, within yheS at 464.441 kb on + strand, within yheS at 464.442 kb on - strand, within yheS at 464.442 kb on - strand, within yheS at 464.442 kb on - strand, within yheS at 464.530 kb on + strand, within yheS at 464.530 kb on + strand, within yheS at 464.587 kb on + strand, within yheS at 464.587 kb on + strand, within yheS at 464.587 kb on + strand, within yheS at 464.588 kb on - strand, within yheS at 464.588 kb on - strand, within yheS at 464.634 kb on - strand, within yheS at 464.768 kb on + strand, within yheS at 464.768 kb on + strand, within yheS at 464.769 kb on - strand, within yheS at 464.889 kb on - strand, within yheS at 465.030 kb on + strand at 465.030 kb on + strand at 465.259 kb on - strand at 465.265 kb on + strand at 465.266 kb on - strand at 465.266 kb on - strand at 465.266 kb on - strand at 465.266 kb on - strand at 465.266 kb on - strand at 465.385 kb on + strand, within yheT at 465.385 kb on + strand, within yheT at 465.396 kb on + strand, within yheT at 465.396 kb on + strand, within yheT at 465.431 kb on - strand, within yheT at 465.526 kb on + strand, within yheT at 465.527 kb on - strand, within yheT at 465.539 kb on + strand, within yheT at 465.540 kb on - strand, within yheT at 465.540 kb on - strand, within yheT at 465.540 kb on - strand, within yheT at 465.643 kb on + strand, within yheT at 465.644 kb on - strand, within yheT at 465.733 kb on + strand, within yheT at 465.734 kb on - strand, within yheT at 465.734 kb on - strand, within yheT at 465.737 kb on + strand, within yheT at 465.738 kb on - strand, within yheT at 465.738 kb on - strand, within yheT at 465.738 kb on - strand, within yheT at 465.743 kb on - strand, within yheT at 465.776 kb on + strand, within yheT at 465.777 kb on - strand, within yheT at 465.859 kb on - strand, within yheT at 465.935 kb on + strand, within yheT at 465.950 kb on - strand, within yheT at 465.950 kb on - strand, within yheT at 466.019 kb on - strand, within yheT at 466.119 kb on + strand at 466.119 kb on + strand at 466.119 kb on + strand at 466.119 kb on + strand at 466.120 kb on - strand at 466.120 kb on - strand at 466.120 kb on - strand at 466.120 kb on - strand at 466.120 kb on - strand at 466.120 kb on - strand at 466.172 kb on + strand at 466.287 kb on + strand, within yheU at 466.288 kb on - strand, within yheU at 466.288 kb on - strand, within yheU at 466.325 kb on + strand, within yheU at 466.377 kb on + strand, within yheU at 466.380 kb on + strand, within yheU at 466.431 kb on + strand at 466.460 kb on + strand at 466.460 kb on + strand at 466.461 kb on - strand at 466.461 kb on - strand at 466.556 kb on - strand, within prkB at 466.556 kb on - strand, within prkB at 466.662 kb on + strand, within prkB at 466.663 kb on - strand, within prkB at 466.749 kb on + strand, within prkB at 466.749 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.757 kb on + strand, within prkB at 466.758 kb on - strand, within prkB at 466.761 kb on + strand, within prkB at 466.762 kb on - strand, within prkB at 466.762 kb on - strand, within prkB at 466.762 kb on - strand, within prkB at 466.762 kb on - strand, within prkB at 466.837 kb on + strand, within prkB at 466.837 kb on + strand, within prkB at 466.838 kb on - strand, within prkB at 466.907 kb on - strand, within prkB at 466.907 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.029 kb on - strand, within prkB at 467.031 kb on - strand, within prkB at 467.031 kb on - strand, within prkB at 467.031 kb on - strand, within prkB at 467.038 kb on - strand, within prkB at 467.038 kb on - strand, within prkB at 467.069 kb on + strand, within prkB at 467.069 kb on + strand, within prkB at 467.069 kb on + strand, within prkB at 467.070 kb on - strand, within prkB
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 464,394 + yheS BNILDI_02455 0.59 +0.2 464,441 + yheS BNILDI_02455 0.62 +0.3 464,441 + yheS BNILDI_02455 0.62 -3.3 464,442 - yheS BNILDI_02455 0.62 -0.0 464,442 - yheS BNILDI_02455 0.62 +0.5 464,442 - yheS BNILDI_02455 0.62 +0.7 464,530 + yheS BNILDI_02455 0.66 +1.7 464,530 + yheS BNILDI_02455 0.66 -1.8 464,587 + yheS BNILDI_02455 0.69 +0.8 464,587 + yheS BNILDI_02455 0.69 -2.4 464,587 + yheS BNILDI_02455 0.69 +0.1 464,588 - yheS BNILDI_02455 0.69 +1.7 464,588 - yheS BNILDI_02455 0.69 -1.6 464,634 - yheS BNILDI_02455 0.72 -3.5 464,768 + yheS BNILDI_02455 0.79 -0.3 464,768 + yheS BNILDI_02455 0.79 +1.0 464,769 - yheS BNILDI_02455 0.79 +0.8 464,889 - yheS BNILDI_02455 0.85 -0.9 465,030 + +0.2 465,030 + +0.0 465,259 - +0.2 465,265 + +0.0 465,266 - -0.9 465,266 - -0.2 465,266 - -0.1 465,266 - -0.9 465,266 - +1.0 465,385 + yheT BNILDI_02460 0.21 -1.3 465,385 + yheT BNILDI_02460 0.21 -3.4 465,396 + yheT BNILDI_02460 0.22 +0.2 465,396 + yheT BNILDI_02460 0.22 +0.5 465,431 - yheT BNILDI_02460 0.25 -0.4 465,526 + yheT BNILDI_02460 0.35 -0.4 465,527 - yheT BNILDI_02460 0.35 -0.1 465,539 + yheT BNILDI_02460 0.36 +0.9 465,540 - yheT BNILDI_02460 0.36 -2.2 465,540 - yheT BNILDI_02460 0.36 +1.4 465,540 - yheT BNILDI_02460 0.36 -0.7 465,643 + yheT BNILDI_02460 0.46 +0.5 465,644 - yheT BNILDI_02460 0.46 -0.3 465,733 + yheT BNILDI_02460 0.55 -0.9 465,734 - yheT BNILDI_02460 0.55 +0.5 465,734 - yheT BNILDI_02460 0.55 +0.6 465,737 + yheT BNILDI_02460 0.55 -0.8 465,738 - yheT BNILDI_02460 0.55 +1.6 465,738 - yheT BNILDI_02460 0.55 +0.9 465,738 - yheT BNILDI_02460 0.55 -0.2 465,743 - yheT BNILDI_02460 0.56 +3.9 465,776 + yheT BNILDI_02460 0.59 +0.3 465,777 - yheT BNILDI_02460 0.59 -0.6 465,859 - yheT BNILDI_02460 0.67 +1.8 465,935 + yheT BNILDI_02460 0.74 -0.1 465,950 - yheT BNILDI_02460 0.76 -1.2 465,950 - yheT BNILDI_02460 0.76 +0.7 466,019 - yheT BNILDI_02460 0.83 +1.5 466,119 + +1.4 466,119 + +0.2 466,119 + +0.7 466,119 + +0.8 466,120 - -4.2 466,120 - -0.1 466,120 - +0.6 466,120 - -0.1 466,120 - +0.5 466,120 - +0.3 466,172 + -0.8 466,287 + yheU BNILDI_02465 0.45 -1.0 466,288 - yheU BNILDI_02465 0.45 +0.4 466,288 - yheU BNILDI_02465 0.45 +0.3 466,325 + yheU BNILDI_02465 0.62 +1.1 466,377 + yheU BNILDI_02465 0.86 +0.7 466,380 + yheU BNILDI_02465 0.87 +1.5 466,431 + +0.3 466,460 + +0.4 466,460 + -0.1 466,461 - +0.3 466,461 - -0.9 466,556 - prkB BNILDI_02470 0.11 -0.0 466,556 - prkB BNILDI_02470 0.11 -0.6 466,662 + prkB BNILDI_02470 0.23 +0.5 466,663 - prkB BNILDI_02470 0.23 +0.4 466,749 + prkB BNILDI_02470 0.33 +1.2 466,749 + prkB BNILDI_02470 0.33 -2.5 466,757 + prkB BNILDI_02470 0.34 +0.0 466,757 + prkB BNILDI_02470 0.34 +1.0 466,757 + prkB BNILDI_02470 0.34 +0.4 466,757 + prkB BNILDI_02470 0.34 -0.4 466,758 - prkB BNILDI_02470 0.34 -0.1 466,761 + prkB BNILDI_02470 0.34 +0.6 466,762 - prkB BNILDI_02470 0.35 -0.4 466,762 - prkB BNILDI_02470 0.35 -0.4 466,762 - prkB BNILDI_02470 0.35 -0.2 466,762 - prkB BNILDI_02470 0.35 -0.5 466,837 + prkB BNILDI_02470 0.43 -0.1 466,837 + prkB BNILDI_02470 0.43 +0.8 466,838 - prkB BNILDI_02470 0.43 +0.7 466,907 - prkB BNILDI_02470 0.51 -3.5 466,907 - prkB BNILDI_02470 0.51 -2.5 467,029 - prkB BNILDI_02470 0.65 +0.1 467,029 - prkB BNILDI_02470 0.65 +0.9 467,029 - prkB BNILDI_02470 0.65 +0.7 467,029 - prkB BNILDI_02470 0.65 -0.7 467,031 - prkB BNILDI_02470 0.66 -2.0 467,031 - prkB BNILDI_02470 0.66 -2.0 467,031 - prkB BNILDI_02470 0.66 -0.4 467,038 - prkB BNILDI_02470 0.66 +0.1 467,038 - prkB BNILDI_02470 0.66 +0.2 467,069 + prkB BNILDI_02470 0.70 -2.1 467,069 + prkB BNILDI_02470 0.70 +0.3 467,069 + prkB BNILDI_02470 0.70 -0.2 467,070 - prkB BNILDI_02470 0.70 -1.4
Or see this region's nucleotide sequence